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The map label for this gene is ybaV [C]

Identifier: 16272943

GI number: 16272943

Start: 1073118

End: 1073456

Strand: Direct

Name: ybaV [C]

Synonym: HI1008

Alternate gene names: 16272943

Gene position: 1073118-1073456 (Clockwise)

Preceding gene: 16272942

Following gene: 16272945

Centisome position: 58.64

GC content: 39.47

Gene sequence:

>339_bases
ATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGCGCTGGTTGTTTCTTCGTCTTTTGCTGAGGAAAAAGCGACAGA
NCAAACCGCTCAATCTGTTGTGACAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAATTGAATATCA
ACACAGCAACTGCCAGTGAAATTCAAAAATCCTTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTGCAATATCGT
GAAAAACACGGTAATTTTKCTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGAGAAAAATCG
TGATCGTATAATCTTTTAA

Upstream 100 bases:

>100_bases
AGTGCGGTCAGTTTCTTGAGGGTTTTTGCAAGGCAGGAAAAAATAGGTGTGTTGATTGCTGATCAACGATTCATATTATA
AGGAAACCTCTNTGAAATTA

Downstream 100 bases:

>100_bases
TTTTTTAACCTCCAATGAATGCCCTGTTTCACAGGGCCTTTTTTATTTTATACTAAAAATAATTCAACATTCATTTCAGC
GATTCTAGCTTGAGCATTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 112; Mature: 112

Protein sequence:

>112_residues
MKTLFTSVVLCGALVVSSSFAEEKATXQTAQSVVTTQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIVQYR
EKHGNFXNAEQLLEVQGIGKATLEKNRDRIIF

Sequences:

>Translated_112_residues
MKTLFTSVVLCGALVVSSSFAEEKATXQTAQSVVTTQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIVQYR
EKHGNFXNAEQLLEVQGIGKATLEKNRDRIIF
>Mature_112_residues
MKTLFTSVVLCGALVVSSSFAEEKATXQTAQSVVTTQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIVQYR
EKHGNFXNAEQLLEVQGIGKATLEKNRDRIIF

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HhH domains

Homologues:

Organism=Escherichia coli, GI1786646, Length=116, Percent_Identity=37.0689655172414, Blast_Score=68, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1008_HAEIN (Q57134)

Other databases:

- EMBL:   L42023
- PIR:   I64107
- RefSeq:   NP_439169.1
- GeneID:   950002
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1008
- NMPDR:   fig|71421.1.peg.972
- TIGR:   HI_1008
- HOGENOM:   HBG729460
- OMA:   FAEEKAT
- ProtClustDB:   CLSK892393
- BioCyc:   HINF71421:HI_1008-MONOMER
- InterPro:   IPR004509
- InterPro:   IPR003583
- SMART:   SM00278
- TIGRFAMs:   TIGR00426

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11867; Mature: 11867

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLFTSVVLCGALVVSSSFAEEKATXQTAQSVVTTQAEAQVAPAVVSDKLNINTATASE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
IQKSLTGIGAKKAEAIVQYREKHGNFXNAEQLLEVQGIGKATLEKNRDRIIF
HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHCCCCCCCC
>Mature Secondary Structure
MKTLFTSVVLCGALVVSSSFAEEKATXQTAQSVVTTQAEAQVAPAVVSDKLNINTATASE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
IQKSLTGIGAKKAEAIVQYREKHGNFXNAEQLLEVQGIGKATLEKNRDRIIF
HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023