Click here to switch to the map view.

The map label for this gene is fpg [H]

Identifier: 16272883

GI number: 16272883

Start: 1005582

End: 1006397

Strand: Reverse

Name: fpg [H]

Synonym: HI0946

Alternate gene names: 16272883

Gene position: 1006397-1005582 (Counterclockwise)

Preceding gene: 16272884

Following gene: 16272874

Centisome position: 54.99

GC content: 37.87

Gene sequence:

>816_bases
ATGCCAGAACTTCCTGAAGTCGAAACTGCACTACGTGGTATTAGCCCTTATCTTAAGAATTTTACGATTGAGAAAGTTGT
CGTGCGCCAGCCTAAATTGCGCTGGGCTGTATCAGAGGAATTGATAACGCTAAAAAATGTAAAAATTGTCGATCTCACTC
GTCGAGCAAAATATTTGATTATTCACACGGAAAAAGGCTATATCATCGGGCATTTGGGCATGTCAGGTTCGGTGCGAATT
GTGCCACAGGATAGTGCAATAGATAAACATGATCATATTGATATTGTAGTGAATAATGGCAAGTTATTACGCTATAACGA
TCCTCGCCGTTTCGGTGCATGGTTGTGGACGGAGAATCTAGATGACTTTCATCTTTTCTTAAAGTTAGGCCCTGAACCAC
TTTCTGATGAATTTAATGCAGAATATTTATTCAAAAAATCTCGTCAAAAATCAACCGCACTTAAAACTTTCTTGATGGAT
AACGCTGTGGTAGTGGGCGTTGGAAATATTTATACGAATGAAAGTTTGTTTATTTGTGGCATTCATCCCCTTAAACTCGC
TAAAAATTTGACTCGCAATCAATGTTTCTCTTTAGTGAACACGATTAAAGATGTTTTGAGAAAAGCCATTATTCAAGGTG
GAACAACACTTAAAGATTTTTTACAGCCCGATGGTCGCCCAGGTTATTTTGCACAAGAATTATTGGTATATGGCAATAAA
GATAAACCTTGTCCAAAGTGCGGTGGAAAAATTGAAAGTTTAATTATTGGACAGCGTAATAGTTTCTTTTGCCCGAAATG
TCAGAAAAGGGGTTAG

Upstream 100 bases:

>100_bases
TTTGAAATATTCATCATTTTAATTTTCAAAGAATATAAAAAAATGGTAAAACTAACCGCACTTTATATCATTATTCTATC
TACTTACTAAGTTGAAAATT

Downstream 100 bases:

>100_bases
AACAAATAAATTTTCAAATTGAAAAGAAAGTATTAAATATAATGAAAACAGCGGTCAAAATAGACCGCTATTTTTAATTT
ACTGGAAATTCTTCAATAAC

Product: formamidopyrimidine-DNA glycosylase

Products: NA

Alternate protein names: Fapy-DNA glycosylase; DNA-(apurinic or apyrimidinic site) lyase mutM; AP lyase mutM [H]

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MPELPEVETALRGISPYLKNFTIEKVVVRQPKLRWAVSEELITLKNVKIVDLTRRAKYLIIHTEKGYIIGHLGMSGSVRI
VPQDSAIDKHDHIDIVVNNGKLLRYNDPRRFGAWLWTENLDDFHLFLKLGPEPLSDEFNAEYLFKKSRQKSTALKTFLMD
NAVVVGVGNIYTNESLFICGIHPLKLAKNLTRNQCFSLVNTIKDVLRKAIIQGGTTLKDFLQPDGRPGYFAQELLVYGNK
DKPCPKCGGKIESLIIGQRNSFFCPKCQKRG

Sequences:

>Translated_271_residues
MPELPEVETALRGISPYLKNFTIEKVVVRQPKLRWAVSEELITLKNVKIVDLTRRAKYLIIHTEKGYIIGHLGMSGSVRI
VPQDSAIDKHDHIDIVVNNGKLLRYNDPRRFGAWLWTENLDDFHLFLKLGPEPLSDEFNAEYLFKKSRQKSTALKTFLMD
NAVVVGVGNIYTNESLFICGIHPLKLAKNLTRNQCFSLVNTIKDVLRKAIIQGGTTLKDFLQPDGRPGYFAQELLVYGNK
DKPCPKCGGKIESLIIGQRNSFFCPKCQKRG
>Mature_270_residues
PELPEVETALRGISPYLKNFTIEKVVVRQPKLRWAVSEELITLKNVKIVDLTRRAKYLIIHTEKGYIIGHLGMSGSVRIV
PQDSAIDKHDHIDIVVNNGKLLRYNDPRRFGAWLWTENLDDFHLFLKLGPEPLSDEFNAEYLFKKSRQKSTALKTFLMDN
AVVVGVGNIYTNESLFICGIHPLKLAKNLTRNQCFSLVNTIKDVLRKAIIQGGTTLKDFLQPDGRPGYFAQELLVYGNKD
KPCPKCGGKIESLIIGQRNSFFCPKCQKRG

Specific function: Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyr

COG id: COG0266

COG function: function code L; Formamidopyrimidine-DNA glycosylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FPG-type zinc finger [H]

Homologues:

Organism=Escherichia coli, GI1790066, Length=269, Percent_Identity=57.6208178438662, Blast_Score=327, Evalue=3e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015886
- InterPro:   IPR015887
- InterPro:   IPR000191
- InterPro:   IPR012319
- InterPro:   IPR020629
- InterPro:   IPR010979
- InterPro:   IPR000214
- InterPro:   IPR010663 [H]

Pfam domain/function: PF01149 Fapy_DNA_glyco; PF06831 H2TH; PF06827 zf-FPG_IleRS [H]

EC number: =3.2.2.23; =4.2.99.18 [H]

Molecular weight: Translated: 30772; Mature: 30641

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS01242 ZF_FPG_1 ; PS51066 ZF_FPG_2 ; PS51068 FPG_CAT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPELPEVETALRGISPYLKNFTIEKVVVRQPKLRWAVSEELITLKNVKIVDLTRRAKYLI
CCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEHHHCEEEECCEEEEEEECCCEEEE
IHTEKGYIIGHLGMSGSVRIVPQDSAIDKHDHIDIVVNNGKLLRYNDPRRFGAWLWTENL
EECCCCEEEEEECCCCEEEEEECCCCCCCCCCEEEEECCCEEEEECCCCHHEEEEEECCC
DDFHLFLKLGPEPLSDEFNAEYLFKKSRQKSTALKTFLMDNAVVVGVGNIYTNESLFICG
CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEEECCEEEEEE
IHPLKLAKNLTRNQCFSLVNTIKDVLRKAIIQGGTTLKDFLQPDGRPGYFAQELLVYGNK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHEECCC
DKPCPKCGGKIESLIIGQRNSFFCPKCQKRG
CCCCCCCCCCEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
PELPEVETALRGISPYLKNFTIEKVVVRQPKLRWAVSEELITLKNVKIVDLTRRAKYLI
CCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEHHHCEEEECCEEEEEEECCCEEEE
IHTEKGYIIGHLGMSGSVRIVPQDSAIDKHDHIDIVVNNGKLLRYNDPRRFGAWLWTENL
EECCCCEEEEEECCCCEEEEEECCCCCCCCCCEEEEECCCEEEEECCCCHHEEEEEECCC
DDFHLFLKLGPEPLSDEFNAEYLFKKSRQKSTALKTFLMDNAVVVGVGNIYTNESLFICG
CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEEECCEEEEEE
IHPLKLAKNLTRNQCFSLVNTIKDVLRKAIIQGGTTLKDFLQPDGRPGYFAQELLVYGNK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHEECCC
DKPCPKCGGKIESLIIGQRNSFFCPKCQKRG
CCCCCCCCCCEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA