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The map label for this gene is rfaL [C]

Identifier: 16272815

GI number: 16272815

Start: 926749

End: 927948

Strand: Reverse

Name: rfaL [C]

Synonym: HI0874

Alternate gene names: 16272815

Gene position: 927948-926749 (Counterclockwise)

Preceding gene: 16272817

Following gene: 16272804

Centisome position: 50.7

GC content: 29.33

Gene sequence:

>1200_bases
ATGATTCAAGAAAAACATCTAACGTTTACAATTAACCTCTTAGTTTCTCTATTTTTCTTAACCATTTTAATCATTCCAAA
GGGTTATAACTATGCGCCAATAATATTAAGCGCAATTGGATTGATTTATTTCATACCATTAAAGAAAAAACTATCTTTTA
GCTCTGAAGATAAAAAACTGATTTTTTCTTTTTTATTTTATTTTTTCACATTCTTATTATCTATCATTATCAATAAAGAT
GGAATTAGAGAAATAGATAATCCAAGCCGACTTCTTTTATTCATTCCTCTACTACTTTTATTCAAAAATTTTCCAATAAA
AAGGAAAACAATTTTATACGCAATTCCTTCTAGTGCATTAATTACAGGATGTGTTGCGTTATTTCAGAAATTTGCATTAG
GATATGAAAAACCGTTTCCTGAAACAATGCATATACAAATGGGCAACATTGCGATCTCTTTAGCCACATTCAGCATTGTT
ATCACTCTTCACTTCTTCATCAAAAAACAATATAAATCTACATTATTTGGGTTTGTAGCCATTATACTTGCTATCATGAC
TAGTGCATTATCTGGGGCTAGAGGTGGATGGATTGGCTTACCCGTTGTAGTTGGTATAATTTTATTTCTATACAAAGAAT
TCATTAATAAGAAACTTATTATAACTTTAATCGCCATTATTACCATTGGATTAACCGCACTAATTACCAGTCCTAAATTC
GGAATTGAAAAACGATATAACGCAGCAAAATCAGATATTGTTAGCTATTTAGAAAAAAACAATAGAAATACCTCATTAGG
TGCCAGATTTGACATGTGGGAAAATGCCTTAATTGCTATAAAGGAAGCGCCTATCTTTGGCCATGGGAGTGATGGATACG
ATGAGTTTAGACATAAACAAGTAAAATCTAAACAAATGGCTAAAACCACTTTAAATTTTGGAAGTTTACATAATCAATAT
TTAGAATCTTGGGTGAAACGTGGTTTAGTTGGATTTATAGCATTAATCCTGATTATTCTAACTCCAATATTTTACTTTAT
TAAAAATTTAAACACCCATAATTTAGAAACAAAATGTATTTGTATTTTAGGAATTATACATATTGTTTCCCATATATTTT
ATTTCACAAGCCAGTCATTCTTGGCTCATAACTCAGGCAATATTTTTTATTTTTCAGCTATGTTGTGTTTTATTGTCTAA

Upstream 100 bases:

>100_bases
TTTATGCCTAATTTCACATCATTCCATCATGAATAACAAGCATTTTACAAATATTTAAGGTAGAATCTACTAAATTTAAG
TTACACATGCTTTTATTCGT

Downstream 100 bases:

>100_bases
TAAAAAGAGAAAAAATTACAAGATAGATAAACATTCTTATCGTTTACCCTATTTAAGAAGATGAACTATTAAACAAATAC
CATTTTACCGTCTGACGAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MIQEKHLTFTINLLVSLFFLTILIIPKGYNYAPIILSAIGLIYFIPLKKKLSFSSEDKKLIFSFLFYFFTFLLSIIINKD
GIREIDNPSRLLLFIPLLLLFKNFPIKRKTILYAIPSSALITGCVALFQKFALGYEKPFPETMHIQMGNIAISLATFSIV
ITLHFFIKKQYKSTLFGFVAIILAIMTSALSGARGGWIGLPVVVGIILFLYKEFINKKLIITLIAIITIGLTALITSPKF
GIEKRYNAAKSDIVSYLEKNNRNTSLGARFDMWENALIAIKEAPIFGHGSDGYDEFRHKQVKSKQMAKTTLNFGSLHNQY
LESWVKRGLVGFIALILIILTPIFYFIKNLNTHNLETKCICILGIIHIVSHIFYFTSQSFLAHNSGNIFYFSAMLCFIV

Sequences:

>Translated_399_residues
MIQEKHLTFTINLLVSLFFLTILIIPKGYNYAPIILSAIGLIYFIPLKKKLSFSSEDKKLIFSFLFYFFTFLLSIIINKD
GIREIDNPSRLLLFIPLLLLFKNFPIKRKTILYAIPSSALITGCVALFQKFALGYEKPFPETMHIQMGNIAISLATFSIV
ITLHFFIKKQYKSTLFGFVAIILAIMTSALSGARGGWIGLPVVVGIILFLYKEFINKKLIITLIAIITIGLTALITSPKF
GIEKRYNAAKSDIVSYLEKNNRNTSLGARFDMWENALIAIKEAPIFGHGSDGYDEFRHKQVKSKQMAKTTLNFGSLHNQY
LESWVKRGLVGFIALILIILTPIFYFIKNLNTHNLETKCICILGIIHIVSHIFYFTSQSFLAHNSGNIFYFSAMLCFIV
>Mature_399_residues
MIQEKHLTFTINLLVSLFFLTILIIPKGYNYAPIILSAIGLIYFIPLKKKLSFSSEDKKLIFSFLFYFFTFLLSIIINKD
GIREIDNPSRLLLFIPLLLLFKNFPIKRKTILYAIPSSALITGCVALFQKFALGYEKPFPETMHIQMGNIAISLATFSIV
ITLHFFIKKQYKSTLFGFVAIILAIMTSALSGARGGWIGLPVVVGIILFLYKEFINKKLIITLIAIITIGLTALITSPKF
GIEKRYNAAKSDIVSYLEKNNRNTSLGARFDMWENALIAIKEAPIFGHGSDGYDEFRHKQVKSKQMAKTTLNFGSLHNQY
LESWVKRGLVGFIALILIILTPIFYFIKNLNTHNLETKCICILGIIHIVSHIFYFTSQSFLAHNSGNIFYFSAMLCFIV

Specific function: Adds The O-Antigen On The Glucose Group Of Lps. [C]

COG id: COG3307

COG function: function code M; Lipid A core - O-antigen ligase and related enzymes

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y874_HAEIN (P44067)

Other databases:

- EMBL:   L42023
- PIR:   D64015
- RefSeq:   NP_439035.1
- GeneID:   949882
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0874
- NMPDR:   fig|71421.1.peg.842
- TIGR:   HI_0874
- HOGENOM:   HBG495022
- OMA:   AWARIGA
- ProtClustDB:   CLSK892384
- BioCyc:   HINF71421:HI_0874-MONOMER
- InterPro:   IPR007016

Pfam domain/function: PF04932 Wzy_C

EC number: NA

Molecular weight: Translated: 45282; Mature: 45282

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xd981c28)-; HASH(0xd54d8a0)-; HASH(0xd4050c0)-; HASH(0xd4bb42c)-; HASH(0xd38200c)-; HASH(0xb359be4)-; HASH(0xd1721a8)-; HASH(0xd83b3a0)-; HASH(0xc48ba18)-; HASH(0xd658938)-;

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQEKHLTFTINLLVSLFFLTILIIPKGYNYAPIILSAIGLIYFIPLKKKLSFSSEDKKL
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCHHHH
IFSFLFYFFTFLLSIIINKDGIREIDNPSRLLLFIPLLLLFKNFPIKRKTILYAIPSSAL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHH
ITGCVALFQKFALGYEKPFPETMHIQMGNIAISLATFSIVITLHFFIKKQYKSTLFGFVA
HHHHHHHHHHHHCCCCCCCCCEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IILAIMTSALSGARGGWIGLPVVVGIILFLYKEFINKKLIITLIAIITIGLTALITSPKF
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC
GIEKRYNAAKSDIVSYLEKNNRNTSLGARFDMWENALIAIKEAPIFGHGSDGYDEFRHKQ
CHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCEEEEECCCEECCCCCCHHHHHHHH
VKSKQMAKTTLNFGSLHNQYLESWVKRGLVGFIALILIILTPIFYFIKNLNTHNLETKCI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
CILGIIHIVSHIFYFTSQSFLAHNSGNIFYFSAMLCFIV
HHHHHHHHHHHHHHHHCCHHHEECCCCEEHHHHHHHHHH
>Mature Secondary Structure
MIQEKHLTFTINLLVSLFFLTILIIPKGYNYAPIILSAIGLIYFIPLKKKLSFSSEDKKL
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCHHHH
IFSFLFYFFTFLLSIIINKDGIREIDNPSRLLLFIPLLLLFKNFPIKRKTILYAIPSSAL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHH
ITGCVALFQKFALGYEKPFPETMHIQMGNIAISLATFSIVITLHFFIKKQYKSTLFGFVA
HHHHHHHHHHHHCCCCCCCCCEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IILAIMTSALSGARGGWIGLPVVVGIILFLYKEFINKKLIITLIAIITIGLTALITSPKF
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC
GIEKRYNAAKSDIVSYLEKNNRNTSLGARFDMWENALIAIKEAPIFGHGSDGYDEFRHKQ
CHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCEEEEECCCEECCCCCCHHHHHHHH
VKSKQMAKTTLNFGSLHNQYLESWVKRGLVGFIALILIILTPIFYFIKNLNTHNLETKCI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
CILGIIHIVSHIFYFTSQSFLAHNSGNIFYFSAMLCFIV
HHHHHHHHHHHHHHHHCCHHHEECCCCEEHHHHHHHHHH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800