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The map label for this gene is rimN [H]

Identifier: 16272599

GI number: 16272599

Start: 699540

End: 700091

Strand: Reverse

Name: rimN [H]

Synonym: HI0656

Alternate gene names: 16272599

Gene position: 700091-699540 (Counterclockwise)

Preceding gene: 16272600

Following gene: 16272598

Centisome position: 38.25

GC content: 43.48

Gene sequence:

>552_bases
ATGAATAGAGAACAAATCGCCGATGCCCTTCGACAAAATCAAGTGGTTGCTTATCCCACTGAAGCTGTATTTGGTTTAGG
CTGTAATCCGCAAAGTGAAAGTGCGGTAAAAAAATTACTCGATTTAAAGCAACGTCCAGTGGAAAAAGGGCTGATTTTAG
TCGCTCCTAGCTTAGATTTTTTCCGTCCTTTTGTCGATTTTGAGCAGATTAACGATGAACAGCTTTCTCGCCTGCAAGGT
AAATATGAACGTCCAACGACTTGGATTGTGCCAGCTAAATCCACCACCCCGCATTTTCTCACAGGAAAATTTGATAGCAT
TGCAATACGTTTGTGCGATCACCCATCTGTGAAAGCCTTATGTGAACTCACGGGTTTTGCATTAACTTCAACGAGTGCAA
ACCTAACAGGAGAGCCACCTTGCCGTACCGCCGATGAAGTGCGGTTACAATTCGGTTCAGATTTTCCAGTATTGAATGAA
ATGGTAGGCAGGGCGCATAATCCATCGGAAATTCGAGACTTGCGCACCAATCAACTTTTTAGACAGGGATAA

Upstream 100 bases:

>100_bases
TCTTTCTTTGTTAAAAAGCGAAGATGGGGAAAAACAAATTTTCCAGTGTGCAAATAAAACTTGCCGTCATATTTTTGAGC
AATAAAAGTAAAAGAATGAA

Downstream 100 bases:

>100_bases
TTTATGGATCTTTATGCTGTGTGGGGCAATCCGATTGCGCAAAGTAAATCGCCGTTAATTCAAAATAAGTTAGCCGCACA
AACCCATCAAACTATGGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MNREQIADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQLSRLQG
KYERPTTWIVPAKSTTPHFLTGKFDSIAIRLCDHPSVKALCELTGFALTSTSANLTGEPPCRTADEVRLQFGSDFPVLNE
MVGRAHNPSEIRDLRTNQLFRQG

Sequences:

>Translated_183_residues
MNREQIADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQLSRLQG
KYERPTTWIVPAKSTTPHFLTGKFDSIAIRLCDHPSVKALCELTGFALTSTSANLTGEPPCRTADEVRLQFGSDFPVLNE
MVGRAHNPSEIRDLRTNQLFRQG
>Mature_183_residues
MNREQIADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQLSRLQG
KYERPTTWIVPAKSTTPHFLTGKFDSIAIRLCDHPSVKALCELTGFALTSTSANLTGEPPCRTADEVRLQFGSDFPVLNE
MVGRAHNPSEIRDLRTNQLFRQG

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=186, Percent_Identity=53.763440860215, Blast_Score=207, Evalue=4e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 20488; Mature: 20488

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNREQIADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDF
CCHHHHHHHHHHCCEEEECCHHEEECCCCCCHHHHHHHHHHHHHCHHHCCEEEEECCHHH
FRPFVDFEQINDEQLSRLQGKYERPTTWIVPAKSTTPHFLTGKFDSIAIRLCDHPSVKAL
HHHHHCHHHCCHHHHHHHCCCCCCCEEEEEECCCCCCCEEECCCCEEEEEECCCCCHHHH
CELTGFALTSTSANLTGEPPCRTADEVRLQFGSDFPVLNEMVGRAHNPSEIRDLRTNQLF
HHHHHHEEECCCCCCCCCCCCCCHHHHHEECCCCCCHHHHHHCCCCCHHHHHHHHHHHHH
RQG
HCC
>Mature Secondary Structure
MNREQIADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDF
CCHHHHHHHHHHCCEEEECCHHEEECCCCCCHHHHHHHHHHHHHCHHHCCEEEEECCHHH
FRPFVDFEQINDEQLSRLQGKYERPTTWIVPAKSTTPHFLTGKFDSIAIRLCDHPSVKAL
HHHHHCHHHCCHHHHHHHCCCCCCCEEEEEECCCCCCCEEECCCCEEEEEECCCCCHHHH
CELTGFALTSTSANLTGEPPCRTADEVRLQFGSDFPVLNEMVGRAHNPSEIRDLRTNQLF
HHHHHHEEECCCCCCCCCCCCCCHHHHHEECCCCCCHHHHHHCCCCCHHHHHHHHHHHHH
RQG
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA