Click here to switch to the map view.

The map label for this gene is yrdD [C]

Identifier: 16272600

GI number: 16272600

Start: 700107

End: 700643

Strand: Reverse

Name: yrdD [C]

Synonym: HI0656.1

Alternate gene names: 16272600

Gene position: 700643-700107 (Counterclockwise)

Preceding gene: 16272601

Following gene: 16272599

Centisome position: 38.28

GC content: 38.92

Gene sequence:

>537_bases
ATGAATCAAAGCCTTTTTCATCATAGCAAACAACAGGAATATTGCCCTCAATGTGGTGCGCCGTTGCAAATTAAACAAGG
CAAAAAAGGGCTGTTTCTAGGTTGCTCTGCTTATCCTGAATGTGATTATTTGCGTCCTTTGCAACGATCGGAGCATAAAG
TATTAAAAACACTTGATGAAATTTGCCCGAAGTGCGGTAATTTATTGCAGTTGAAACAAGGCAGTTTTGGGATGTTTATT
GGTTGTAGTCATTATCCTGAATGCGATTTTGTGGTGCGGGAAGAATCTGAATCTGAGGAAAAAATTACTTGTCCTGAATG
TAAAACGGGACATTTGATTTCTCGTCGAGGTCGCCAAGGAAAGATTTTTTACGGCTGTGATAATTTCCCTAAATGTAAAT
TTTCTTTGCCTGCCAAGCCTTATTCCGTGCCTTGCCCAACGTGCCATTTTCCTCTTTCTTTGTTAAAAAGCGAAGATGGG
GAAAAACAAATTTTCCAGTGTGCAAATAAAACTTGCCGTCATATTTTTGAGCAATAA

Upstream 100 bases:

>100_bases
TCAACAAGTGGATGTGAAGAAAGCATTAGATGATGTAGAAACGGAATGGATGACTGCACAGGAAGAATTGGAAGAAATGC
TTCAAGCATAAGGATAGATT

Downstream 100 bases:

>100_bases
AAGTAAAAGAATGAAATGAATAGAGAACAAATCGCCGATGCCCTTCGACAAAATCAAGTGGTTGCTTATCCCACTGAAGC
TGTATTTGGTTTAGGCTGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MNQSLFHHSKQQEYCPQCGAPLQIKQGKKGLFLGCSAYPECDYLRPLQRSEHKVLKTLDEICPKCGNLLQLKQGSFGMFI
GCSHYPECDFVVREESESEEKITCPECKTGHLISRRGRQGKIFYGCDNFPKCKFSLPAKPYSVPCPTCHFPLSLLKSEDG
EKQIFQCANKTCRHIFEQ

Sequences:

>Translated_178_residues
MNQSLFHHSKQQEYCPQCGAPLQIKQGKKGLFLGCSAYPECDYLRPLQRSEHKVLKTLDEICPKCGNLLQLKQGSFGMFI
GCSHYPECDFVVREESESEEKITCPECKTGHLISRRGRQGKIFYGCDNFPKCKFSLPAKPYSVPCPTCHFPLSLLKSEDG
EKQIFQCANKTCRHIFEQ
>Mature_178_residues
MNQSLFHHSKQQEYCPQCGAPLQIKQGKKGLFLGCSAYPECDYLRPLQRSEHKVLKTLDEICPKCGNLLQLKQGSFGMFI
GCSHYPECDFVVREESESEEKITCPECKTGHLISRRGRQGKIFYGCDNFPKCKFSLPAKPYSVPCPTCHFPLSLLKSEDG
EKQIFQCANKTCRHIFEQ

Specific function: Unknown

COG id: COG0551

COG function: function code L; Zn-finger domain associated with topoisomerase type I

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yrdD

Homologues:

Organism=Escherichia coli, GI48994931, Length=174, Percent_Identity=47.1264367816092, Blast_Score=167, Evalue=5e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y656A_HAEIN (P46494)

Other databases:

- EMBL:   L42023
- RefSeq:   NP_438817.1
- GeneID:   949423
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0656.1
- NMPDR:   fig|71421.1.peg.627
- TIGR:   HI_0656.1
- HOGENOM:   HBG296904
- OMA:   GKTFYAC
- ProtClustDB:   CLSK870427
- BioCyc:   HINF71421:HI_0656.1-MONOMER
- GO:   GO:0005694
- InterPro:   IPR013498

Pfam domain/function: PF01396 zf-C4_Topoisom

EC number: NA

Molecular weight: Translated: 20305; Mature: 20305

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
10.1 %Cys+Met (Translated Protein)
9.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
10.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQSLFHHSKQQEYCPQCGAPLQIKQGKKGLFLGCSAYPECDYLRPLQRSEHKVLKTLDE
CCCCHHHCCHHHHHHHCCCCCCEEECCCCCEEEECCCCCCCCHHCHHHHHHHHHHHHHHH
ICPKCGNLLQLKQGSFGMFIGCSHYPECDFVVREESESEEKITCPECKTGHLISRRGRQG
HHHHHCCEEEECCCCCEEEEECCCCCCCCEEEECCCCCCCCEECCCCCCCCHHHCCCCCC
KIFYGCDNFPKCKFSLPAKPYSVPCPTCHFPLSLLKSEDGEKQIFQCANKTCRHIFEQ
EEEECCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNQSLFHHSKQQEYCPQCGAPLQIKQGKKGLFLGCSAYPECDYLRPLQRSEHKVLKTLDE
CCCCHHHCCHHHHHHHCCCCCCEEECCCCCEEEECCCCCCCCHHCHHHHHHHHHHHHHHH
ICPKCGNLLQLKQGSFGMFIGCSHYPECDFVVREESESEEKITCPECKTGHLISRRGRQG
HHHHHCCEEEECCCCCEEEEECCCCCCCCEEEECCCCCCCCEECCCCCCCCHHHCCCCCC
KIFYGCDNFPKCKFSLPAKPYSVPCPTCHFPLSLLKSEDGEKQIFQCANKTCRHIFEQ
EEEECCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800