Click here to switch to the map view.

The map label for this gene is tex [C]

Identifier: 16272511

GI number: 16272511

Start: 588147

End: 590435

Strand: Reverse

Name: tex [C]

Synonym: HI0568

Alternate gene names: 16272511

Gene position: 590435-588147 (Counterclockwise)

Preceding gene: 16272513

Following gene: 16272510

Centisome position: 32.26

GC content: 41.85

Gene sequence:

>2289_bases
ATGTTAAATCAACAAATTAGCCAAATTATTGCGGCAGAATTAACCGTTCAACCCCAACAAATCTTTGCAGCTATTCAATT
ATTAGATGATGGCAACACCATTCCATTTATTGCACGTTATCGTAAAGAAGCTACAGGTGGCTTAGATGACACCCAACTTC
GTCATTTTGAAACCCGTTTAATTTATTTGCGTGAATTAGAAGATCGTCGTCAAACTATTTTGAAATCTATTGAAGAGCAA
GGGAAATTGACCGATGAATTGCGTGACAAAATCCATGCGACACAAAGCAAAACCGAATTAGAGGATTTATATTTACCGTA
CAAACCTAAACGTCGCACCAAAGGGCAAATTGCCATTGAAGCCGGTCTTGAGCCATTGGCTAATTTACTTTGGAATGAGC
CAAAAAATGATCCAGAATCAACCGCACTTTCCTTTGTTGATGCTGAAAAAGGCGTAGCTGATAGCAAAGCTGCGTTAGAC
GGTGCTCGCATTATTTTAATGGAACGTTTTGCTGAAGATGCGGGCTTATTAGCGAAAGTCCGTGATTATTTAGCGAAAAA
TGCGGTTATCGTATCAAAAGTGATCGAAGGCAAAGAAACGGAAGGTGCAAAATTCCAAGATTATTTCGACCACCAAGAAT
TATTGAAAAATGTGCCTTCTCACCGAGCATTGGCTATGTTCCGTGGACGTAATGAGGGCATTTTACAATTAAGTTTAAAT
GCTGATCCTGATGCGGAAGAGGGAAGTCGTCAAAGTTATTGTGAAGAAATTATTCGTGATTATTTAGATGTACGTTTCAC
GGGACAGCCAGCAGATAAATGGCGTGAGCAAGTGATTGCGTGGACGTGGAAAATCAAAGTTTCGTTGCATTTAGAAACGG
AATTAATGGCAAGTTTACGTGAAAAAGCGGAAGAAGAAGCCATAGATGTTTTCGCCCGAAATCTGACCGCACTTTTAATG
GCTGCACCGGCTGGTGCGAAGAGCACAATGGGCTTGGACCCAGGCTTACGTACAGGTGTTAAAGTCGCGATGGTTGATAA
CACAGGTAAATTATTAGATACCACCACCATTTATCCACACACGGGTCGTGAAGCTGAAGCTCAAGTGGCGATTTTCAGCT
TAATCCGCAAACATAACGTGGAATTAATTGCCATTGGTAATGGTACGGCTTCTCGTGAAACTGAACGTTTTGCGAAAGAC
GTGATTAAAGAAATTAAAGAAAATAAACCACAAACCGTTGTAGTAAGCGAAGCTGGCGCGTCCGTTTATTCAGCTTCTGA
ATTTGCCGCAAATGAATTCCCGAATTTAGATGTATCTTTACGTGGTGCGGTCTCTATTGCACGTCGTTTACAAGATCCAT
TGGCAGAATTAGTGAAAATCGAACCGAAAGCCATTGGTGTAGGGCAATATCAGCACGATGTAAACCAAACCCAACTTGCG
CGTAAACTCGATGCAGTAGTGGAAGACTGTGTAAACGCAGTAGGTGTGGATTTGAATACGGCATCCGCACCATTGCTCGC
TCGCGTGGCTGGAATGACGAAAACCTTAGCGCAAAACATTGTGGAATATCGTGATGAAAATGGGCGTTTTGAAAGTCGTA
GCGAATTGAAAAAAGTGCCACGTTTAGGGCCAAAAGCCTTTGAGCAATGTGCAGGCTTTATGCGTATTGCAAACGGGAAA
AATCCACTTGATGCTTCAGGTGTTCACCCAGAAGCTTATCCTGTGGTCGAAAAAATTTTGCAAGCTACCGCGCAATCTAT
TCAAGATTTAATGAGTAATGCCGGTGTGGTACGTCAGCTTGATGCAAAACAATTCATTGATGAGCAATTTGGTTTACCGA
CCGTCCAAGATATTTTCAAAGAGTTAGAAAAACCAGGGCGCGATCCGCGTGGCGAGTTCAAAACCGCTGTATTTGCTGAG
GGCGTGGAAGAAATAACGGATTTAAAATCTGGAATGATTTTAGAAGGAACAGTGACTAATGTAACTAATTTTGGCGCATT
TGTGGATATTGGTGTTCATCAAGATGGTTTAGTGCATATTTCATCATTAAGCGATAAATTCGTGGAAGATCCCCATCAAG
TGGTAAAAACAGGCAACATTGTAAAAGTCAAAGTGTTAGAAGTGGATGTGCCACGTAAACGCATTGCATTGACGATGCGA
TTAGATGAAAGTGCGGTCAAAAATGATAGCAAATCTGACCGCACTTTATCCACAAGACCTCGTGGAAATATGCAGCGAGA
GGCGCGTAATTCAAGAGGTAATAATGTGATAGGCAATGCCTTTGCCTGA

Upstream 100 bases:

>100_bases
GCCATAATAAAAATAAAAGAAAGTTTTTTGAATTATATTTGAGCCATCCCGCTAAAACCAGTATTCTATCTTCGTTTTTT
TATAATAAAGAAGTACGACA

Downstream 100 bases:

>100_bases
TGCACTAAAAAATTGGAAAAAATAACAAGTTATGGGGCGAAATTATTCGCCCTTTTTTTATCGTTTTCCTTTCCCGAAAA
GCATCGCCAAAACGGCGATT

Product: transcription accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 762; Mature: 762

Protein sequence:

>762_residues
MLNQQISQIIAAELTVQPQQIFAAIQLLDDGNTIPFIARYRKEATGGLDDTQLRHFETRLIYLRELEDRRQTILKSIEEQ
GKLTDELRDKIHATQSKTELEDLYLPYKPKRRTKGQIAIEAGLEPLANLLWNEPKNDPESTALSFVDAEKGVADSKAALD
GARIILMERFAEDAGLLAKVRDYLAKNAVIVSKVIEGKETEGAKFQDYFDHQELLKNVPSHRALAMFRGRNEGILQLSLN
ADPDAEEGSRQSYCEEIIRDYLDVRFTGQPADKWREQVIAWTWKIKVSLHLETELMASLREKAEEEAIDVFARNLTALLM
AAPAGAKSTMGLDPGLRTGVKVAMVDNTGKLLDTTTIYPHTGREAEAQVAIFSLIRKHNVELIAIGNGTASRETERFAKD
VIKEIKENKPQTVVVSEAGASVYSASEFAANEFPNLDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQTQLA
RKLDAVVEDCVNAVGVDLNTASAPLLARVAGMTKTLAQNIVEYRDENGRFESRSELKKVPRLGPKAFEQCAGFMRIANGK
NPLDASGVHPEAYPVVEKILQATAQSIQDLMSNAGVVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAE
GVEEITDLKSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIALTMR
LDESAVKNDSKSDRTLSTRPRGNMQREARNSRGNNVIGNAFA

Sequences:

>Translated_762_residues
MLNQQISQIIAAELTVQPQQIFAAIQLLDDGNTIPFIARYRKEATGGLDDTQLRHFETRLIYLRELEDRRQTILKSIEEQ
GKLTDELRDKIHATQSKTELEDLYLPYKPKRRTKGQIAIEAGLEPLANLLWNEPKNDPESTALSFVDAEKGVADSKAALD
GARIILMERFAEDAGLLAKVRDYLAKNAVIVSKVIEGKETEGAKFQDYFDHQELLKNVPSHRALAMFRGRNEGILQLSLN
ADPDAEEGSRQSYCEEIIRDYLDVRFTGQPADKWREQVIAWTWKIKVSLHLETELMASLREKAEEEAIDVFARNLTALLM
AAPAGAKSTMGLDPGLRTGVKVAMVDNTGKLLDTTTIYPHTGREAEAQVAIFSLIRKHNVELIAIGNGTASRETERFAKD
VIKEIKENKPQTVVVSEAGASVYSASEFAANEFPNLDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQTQLA
RKLDAVVEDCVNAVGVDLNTASAPLLARVAGMTKTLAQNIVEYRDENGRFESRSELKKVPRLGPKAFEQCAGFMRIANGK
NPLDASGVHPEAYPVVEKILQATAQSIQDLMSNAGVVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAE
GVEEITDLKSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIALTMR
LDESAVKNDSKSDRTLSTRPRGNMQREARNSRGNNVIGNAFA
>Mature_762_residues
MLNQQISQIIAAELTVQPQQIFAAIQLLDDGNTIPFIARYRKEATGGLDDTQLRHFETRLIYLRELEDRRQTILKSIEEQ
GKLTDELRDKIHATQSKTELEDLYLPYKPKRRTKGQIAIEAGLEPLANLLWNEPKNDPESTALSFVDAEKGVADSKAALD
GARIILMERFAEDAGLLAKVRDYLAKNAVIVSKVIEGKETEGAKFQDYFDHQELLKNVPSHRALAMFRGRNEGILQLSLN
ADPDAEEGSRQSYCEEIIRDYLDVRFTGQPADKWREQVIAWTWKIKVSLHLETELMASLREKAEEEAIDVFARNLTALLM
AAPAGAKSTMGLDPGLRTGVKVAMVDNTGKLLDTTTIYPHTGREAEAQVAIFSLIRKHNVELIAIGNGTASRETERFAKD
VIKEIKENKPQTVVVSEAGASVYSASEFAANEFPNLDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQTQLA
RKLDAVVEDCVNAVGVDLNTASAPLLARVAGMTKTLAQNIVEYRDENGRFESRSELKKVPRLGPKAFEQCAGFMRIANGK
NPLDASGVHPEAYPVVEKILQATAQSIQDLMSNAGVVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAE
GVEEITDLKSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIALTMR
LDESAVKNDSKSDRTLSTRPRGNMQREARNSRGNNVIGNAFA

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain

Homologues:

Organism=Homo sapiens, GI221136781, Length=793, Percent_Identity=34.6784363177806, Blast_Score=398, Evalue=1e-110,
Organism=Homo sapiens, GI27597090, Length=719, Percent_Identity=23.5048678720445, Blast_Score=110, Evalue=6e-24,
Organism=Escherichia coli, GI87082262, Length=759, Percent_Identity=71.6732542819499, Blast_Score=1109, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=76, Percent_Identity=40.7894736842105, Blast_Score=66, Evalue=1e-11,
Organism=Escherichia coli, GI145693187, Length=80, Percent_Identity=46.25, Blast_Score=63, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17511129, Length=709, Percent_Identity=28.9139633286319, Blast_Score=236, Evalue=5e-62,
Organism=Caenorhabditis elegans, GI17552892, Length=688, Percent_Identity=22.3837209302326, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI62484314, Length=784, Percent_Identity=31.5051020408163, Blast_Score=378, Evalue=1e-105,
Organism=Drosophila melanogaster, GI24640080, Length=452, Percent_Identity=22.5663716814159, Blast_Score=83, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y568_HAEIN (P71353)

Other databases:

- EMBL:   L42023
- RefSeq:   NP_438725.1
- ProteinModelPortal:   P71353
- SMR:   P71353
- GeneID:   949614
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0568
- NMPDR:   fig|71421.1.peg.538
- TIGR:   HI_0568
- HOGENOM:   HBG285811
- OMA:   YKQKRRT
- ProtClustDB:   CLSK2299238
- BioCyc:   HINF71421:HI_0568-MONOMER
- GO:   GO:0005737
- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097
- Gene3D:   G3DSA:2.40.50.140
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00278
- SMART:   SM00316
- SMART:   SM00732

Pfam domain/function: PF00575 S1; PF09371 Tex_N; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 84426; Mature: 84426

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNQQISQIIAAELTVQPQQIFAAIQLLDDGNTIPFIARYRKEATGGLDDTQLRHFETRL
CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
IYLRELEDRRQTILKSIEEQGKLTDELRDKIHATQSKTELEDLYLPYKPKRRTKGQIAIE
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCEEEE
AGLEPLANLLWNEPKNDPESTALSFVDAEKGVADSKAALDGARIILMERFAEDAGLLAKV
CCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHH
RDYLAKNAVIVSKVIEGKETEGAKFQDYFDHQELLKNVPSHRALAMFRGRNEGILQLSLN
HHHHHCCHHHHHHHHCCCCCCCCCHHHHCCHHHHHHCCCCHHHHHHHCCCCCCEEEEEEC
ADPDAEEGSRQSYCEEIIRDYLDVRFTGQPADKWREQVIAWTWKIKVSLHLETELMASLR
CCCCCCCCCHHHHHHHHHHHHHCEEECCCCHHHHHHHHEEEEEEEEEEEEEHHHHHHHHH
EKAEEEAIDVFARNLTALLMAAPAGAKSTMGLDPGLRTGVKVAMVDNTGKLLDTTTIYPH
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCC
TGREAEAQVAIFSLIRKHNVELIAIGNGTASRETERFAKDVIKEIKENKPQTVVVSEAGA
CCCCCHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCC
SVYSASEFAANEFPNLDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQTQLA
CHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHH
RKLDAVVEDCVNAVGVDLNTASAPLLARVAGMTKTLAQNIVEYRDENGRFESRSELKKVP
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCC
RLGPKAFEQCAGFMRIANGKNPLDASGVHPEAYPVVEKILQATAQSIQDLMSNAGVVRQL
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
DAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAEGVEEITDLKSGMILEGTVTN
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCHHC
VTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIALTMR
HHCCCCEEEECCCCCCCEEEHHHHHHHHCCHHHHHHCCCEEEEEEEEECCCHHHEEEEEE
LDESAVKNDSKSDRTLSTRPRGNMQREARNSRGNNVIGNAFA
ECHHHHCCCCCCCCEECCCCCCCHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MLNQQISQIIAAELTVQPQQIFAAIQLLDDGNTIPFIARYRKEATGGLDDTQLRHFETRL
CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
IYLRELEDRRQTILKSIEEQGKLTDELRDKIHATQSKTELEDLYLPYKPKRRTKGQIAIE
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCEEEE
AGLEPLANLLWNEPKNDPESTALSFVDAEKGVADSKAALDGARIILMERFAEDAGLLAKV
CCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHH
RDYLAKNAVIVSKVIEGKETEGAKFQDYFDHQELLKNVPSHRALAMFRGRNEGILQLSLN
HHHHHCCHHHHHHHHCCCCCCCCCHHHHCCHHHHHHCCCCHHHHHHHCCCCCCEEEEEEC
ADPDAEEGSRQSYCEEIIRDYLDVRFTGQPADKWREQVIAWTWKIKVSLHLETELMASLR
CCCCCCCCCHHHHHHHHHHHHHCEEECCCCHHHHHHHHEEEEEEEEEEEEEHHHHHHHHH
EKAEEEAIDVFARNLTALLMAAPAGAKSTMGLDPGLRTGVKVAMVDNTGKLLDTTTIYPH
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCC
TGREAEAQVAIFSLIRKHNVELIAIGNGTASRETERFAKDVIKEIKENKPQTVVVSEAGA
CCCCCHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCC
SVYSASEFAANEFPNLDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQTQLA
CHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHH
RKLDAVVEDCVNAVGVDLNTASAPLLARVAGMTKTLAQNIVEYRDENGRFESRSELKKVP
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCC
RLGPKAFEQCAGFMRIANGKNPLDASGVHPEAYPVVEKILQATAQSIQDLMSNAGVVRQL
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
DAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAEGVEEITDLKSGMILEGTVTN
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCHHC
VTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIALTMR
HHCCCCEEEECCCCCCCEEEHHHHHHHHCCHHHHHHCCCEEEEEEEEECCCHHHEEEEEE
LDESAVKNDSKSDRTLSTRPRGNMQREARNSRGNNVIGNAFA
ECHHHHCCCCCCCCEECCCCCCCHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800