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The map label for this gene is ygfZ [C]

Identifier: 16272414

GI number: 16272414

Start: 488468

End: 489310

Strand: Reverse

Name: ygfZ [C]

Synonym: HI0466

Alternate gene names: 16272414

Gene position: 489310-488468 (Counterclockwise)

Preceding gene: 161350015

Following gene: 16272409

Centisome position: 26.74

GC content: 36.65

Gene sequence:

>843_bases
ATGTCTCAATTTATTTCTCTTACTCAATATCAGCTGATTGAAGTACAGGGTGCGGATGCAGAAAAATATTTGCAAGGGCA
ATTAACTTCTGATGTTGTGCGATTAGCAAGTGGCGCAACGACACTTACAGCTCACTGCGACCCAAAAGGTAAAATGAATG
CAATTTATCGTTTGTTTAAAGTAAGTAGTGAACAATTCTTTTTACTCGTTAAGAAAGATATTTTGCCAAGCGGTCTAGAT
GCTTTGAAAAAATATGCGGTATTTTCCAAAGTTAGTTTTGATTTACGTGATTGGCAAATCATTGGCGTAATAGGTGAAAA
ATGTGGAAAAATTACACCGAACTTTTCATTAGAAATTGATGAAAAACGTTCAATTTTATTAAATGAAACTGAATTGCCCG
TGAATTTTAATGGCGATGAAAAAATTTGGGAAGTAGCTGATATTCAAGCAGGATTGCCAAATTTAAGTCCTCAAACGCAA
AATGAATTTATCCCACAAGCCCTAAATTTACAGGCTATTGAGCAAGCCATTTCTTTTACCAAAGGTTGTTATATTGGGCA
AGAAACCGTGGCACGTGCGAAATATCGTGGTGCGAATAAACGCGCAATGTTTATTTTTAAAGTGCAAACCCAGCAGGAAG
CGGAAATTGGCAGTGAAATTGAAATGCAGCTTGAAGCTAATTGGCGTAAGACTGGCACGATTACAAGTGCGGTCAATTTA
GACGGTGTTTTATGGTTGCAAGTTGTGATGAATAACGACATTGATTCAGAGCAACAATTTAGGTTGCTGAATAGTGAAAT
ATTGTTAGAGCGAGTGCAGTTACCTTATTCGATTACTGAATAA

Upstream 100 bases:

>100_bases
TAAATCCATTAATGCAGATATCACGGCTTCTGCGGTGGAGCTAAAAGTGCTTATTGAACAAATGCGTGAGCAAATTCAGA
ATTTAGAATAGGAAAACAGA

Downstream 100 bases:

>100_bases
GAAAGCAAAAAAAGATCAGGCATTAACCTGATCTTTTTTCTATTTAGTATAGTACACGAGCACGAATTGTGCCATCTATT
TCCTTCAATTTCGTCAGTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MSQFISLTQYQLIEVQGADAEKYLQGQLTSDVVRLASGATTLTAHCDPKGKMNAIYRLFKVSSEQFFLLVKKDILPSGLD
ALKKYAVFSKVSFDLRDWQIIGVIGEKCGKITPNFSLEIDEKRSILLNETELPVNFNGDEKIWEVADIQAGLPNLSPQTQ
NEFIPQALNLQAIEQAISFTKGCYIGQETVARAKYRGANKRAMFIFKVQTQQEAEIGSEIEMQLEANWRKTGTITSAVNL
DGVLWLQVVMNNDIDSEQQFRLLNSEILLERVQLPYSITE

Sequences:

>Translated_280_residues
MSQFISLTQYQLIEVQGADAEKYLQGQLTSDVVRLASGATTLTAHCDPKGKMNAIYRLFKVSSEQFFLLVKKDILPSGLD
ALKKYAVFSKVSFDLRDWQIIGVIGEKCGKITPNFSLEIDEKRSILLNETELPVNFNGDEKIWEVADIQAGLPNLSPQTQ
NEFIPQALNLQAIEQAISFTKGCYIGQETVARAKYRGANKRAMFIFKVQTQQEAEIGSEIEMQLEANWRKTGTITSAVNL
DGVLWLQVVMNNDIDSEQQFRLLNSEILLERVQLPYSITE
>Mature_279_residues
SQFISLTQYQLIEVQGADAEKYLQGQLTSDVVRLASGATTLTAHCDPKGKMNAIYRLFKVSSEQFFLLVKKDILPSGLDA
LKKYAVFSKVSFDLRDWQIIGVIGEKCGKITPNFSLEIDEKRSILLNETELPVNFNGDEKIWEVADIQAGLPNLSPQTQN
EFIPQALNLQAIEQAISFTKGCYIGQETVARAKYRGANKRAMFIFKVQTQQEAEIGSEIEMQLEANWRKTGTITSAVNLD
GVLWLQVVMNNDIDSEQQFRLLNSEILLERVQLPYSITE

Specific function: Unknown

COG id: COG0354

COG function: function code R; Predicted aminomethyltransferase related to GcvT

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygfZ (UP14) and B.aphidicola (subsp. Acyrthosiphon pisum) BU435

Homologues:

Organism=Escherichia coli, GI1789265, Length=308, Percent_Identity=37.3376623376623, Blast_Score=185, Evalue=4e-48,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): Y466_HAEIN (P44000)

Other databases:

- EMBL:   L42023
- PIR:   I64007
- RefSeq:   NP_438627.1
- ProteinModelPortal:   P44000
- SMR:   P44000
- GeneID:   949552
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0466
- NMPDR:   fig|71421.1.peg.440
- TIGR:   HI_0466
- HOGENOM:   HBG700628
- OMA:   EFIPQAL
- ProtClustDB:   CLSK870648
- BioCyc:   HINF71421:HI_0466-MONOMER
- GO:   GO:0005737
- InterPro:   IPR017703
- InterPro:   IPR006222
- TIGRFAMs:   TIGR03317

Pfam domain/function: PF01571 GCV_T

EC number: NA

Molecular weight: Translated: 31549; Mature: 31418

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFISLTQYQLIEVQGADAEKYLQGQLTSDVVRLASGATTLTAHCDPKGKMNAIYRLFK
CCCHHCCCEEEEEEEECCCHHHHHHCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHH
VSSEQFFLLVKKDILPSGLDALKKYAVFSKVSFDLRDWQIIGVIGEKCGKITPNFSLEID
CCCCEEEEEEECCCCCCHHHHHHHHHHHHHEEECCCCEEEEEEEHHHCCCCCCCCEEEEC
EKRSILLNETELPVNFNGDEKIWEVADIQAGLPNLSPQTQNEFIPQALNLQAIEQAISFT
CCCCEEEECCCCCEEECCCCCEEEEHHHHCCCCCCCCCCCHHHCCHHCCHHHHHHHHHHH
KGCYIGQETVARAKYRGANKRAMFIFKVQTQQEAEIGSEIEMQLEANWRKTGTITSAVNL
CCCCCCHHHHHHHHHCCCCCEEEEEEEECCCHHHHCCCEEEEEEECCCCCCCCEEEEECC
DGVLWLQVVMNNDIDSEQQFRLLNSEILLERVQLPYSITE
CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEECCC
>Mature Secondary Structure 
SQFISLTQYQLIEVQGADAEKYLQGQLTSDVVRLASGATTLTAHCDPKGKMNAIYRLFK
CCHHCCCEEEEEEEECCCHHHHHHCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHH
VSSEQFFLLVKKDILPSGLDALKKYAVFSKVSFDLRDWQIIGVIGEKCGKITPNFSLEID
CCCCEEEEEEECCCCCCHHHHHHHHHHHHHEEECCCCEEEEEEEHHHCCCCCCCCEEEEC
EKRSILLNETELPVNFNGDEKIWEVADIQAGLPNLSPQTQNEFIPQALNLQAIEQAISFT
CCCCEEEECCCCCEEECCCCCEEEEHHHHCCCCCCCCCCCHHHCCHHCCHHHHHHHHHHH
KGCYIGQETVARAKYRGANKRAMFIFKVQTQQEAEIGSEIEMQLEANWRKTGTITSAVNL
CCCCCCHHHHHHHHHCCCCCEEEEEEEECCCHHHHCCCEEEEEEECCCCCCCCEEEEECC
DGVLWLQVVMNNDIDSEQQFRLLNSEILLERVQLPYSITE
CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800