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The map label for this gene is vapB

Identifier: 16272274

GI number: 16272274

Start: 351138

End: 351374

Strand: Direct

Name: vapB

Synonym: HI0321

Alternate gene names: NA

Gene position: 351138-351374 (Clockwise)

Preceding gene: 16272273

Following gene: 16272275

Centisome position: 19.19

GC content: 40.51

Gene sequence:

>237_bases
ATGCTTACTAAAGTGTTTCAAAGTGGTAACAGCCAAGCTGTTCGGATCCCGATGGACTTTCGTTTTGACGTCGATACCGT
AGAAATTTTCCGAAAGGAAAATGGGGATGTGGTATTACGCCCAGTTTCTAAAAAAACAGATGATTTTCTTGCGTTATTTG
AAGGATTTGATGAGACCTTTATTCAAGCACTTGAAGCGCGTGATGATTTACCGCCTCAGGAGCGAGAAAATTTATGA

Upstream 100 bases:

>100_bases
TAAATAAAACAACGGTAATTTGATCTTCTTGCTTGCATACAGCAATTGAAATGATTAGTATATACTTATTTAAATACATA
GTATATACGAGAGGGTAAAT

Downstream 100 bases:

>100_bases
TTTATATGTTAGACACCAATATCATTATTTATTTAATGAAAAATCGCCCCAAAATTATTGCCGAACGAGTATCACAATTA
TTGCCTAATGATCGCTTAGT

Product: virulence-associated protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 78; Mature: 78

Protein sequence:

>78_residues
MLTKVFQSGNSQAVRIPMDFRFDVDTVEIFRKENGDVVLRPVSKKTDDFLALFEGFDETFIQALEARDDLPPQERENL

Sequences:

>Translated_78_residues
MLTKVFQSGNSQAVRIPMDFRFDVDTVEIFRKENGDVVLRPVSKKTDDFLALFEGFDETFIQALEARDDLPPQERENL
>Mature_78_residues
MLTKVFQSGNSQAVRIPMDFRFDVDTVEIFRKENGDVVLRPVSKKTDDFLALFEGFDETFIQALEARDDLPPQERENL

Specific function: Unknown

COG id: COG4456

COG function: function code S; Virulence-associated protein and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.nodosus virulence-associated protein B (vapB)

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y321_HAEIN (Q57534)

Other databases:

- EMBL:   L42023
- PIR:   F64061
- RefSeq:   NP_438486.1
- ProteinModelPortal:   Q57534
- GeneID:   949433
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0321
- TIGR:   HI_0321
- HOGENOM:   HBG451550
- OMA:   GRNDVAP
- ProtClustDB:   CLSK808402
- BioCyc:   HINF71421:HI_0321-MONOMER
- InterPro:   IPR007159
- SMART:   SM00966

Pfam domain/function: PF04014 SpoVT_AbrB

EC number: NA

Molecular weight: Translated: 9037; Mature: 9037

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTKVFQSGNSQAVRIPMDFRFDVDTVEIFRKENGDVVLRPVSKKTDDFLALFEGFDETF
CCCCCCCCCCCCEEEECCCCEECCHHHEEEECCCCCEEEEECCCCCHHHHHHHHCCCHHH
IQALEARDDLPPQERENL
HHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLTKVFQSGNSQAVRIPMDFRFDVDTVEIFRKENGDVVLRPVSKKTDDFLALFEGFDETF
CCCCCCCCCCCCEEEECCCCEECCHHHEEEECCCCCEEEEECCCCCHHHHHHHHCCCHHH
IQALEARDDLPPQERENL
HHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023