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The map label for this gene is 16272275

Identifier: 16272275

GI number: 16272275

Start: 351371

End: 351775

Strand: Direct

Name: 16272275

Synonym: HI0322

Alternate gene names: NA

Gene position: 351371-351775 (Clockwise)

Preceding gene: 16272274

Following gene: 16272276

Centisome position: 19.2

GC content: 33.58

Gene sequence:

>405_bases
ATGATTTATATGTTAGACACCAATATCATTATTTATTTAATGAAAAATCGCCCCAAAATTATTGCCGAACGAGTATCACA
ATTATTGCCTAATGATCGCTTAGTTATGAGCTTTATTACTTATGCTGAACTTATTAAAGGCGCCTTTGGTAGTCAAAATT
ATGAGCAATCAATACGAGCAATAGAATTACTTACTGAACGAGTGAATGTACTATATCCCAATGAACAAATCTGTTTACAT
TATGGCAAATGGGCAAATACACTCAAAAAACAAGGGCGACCTATCGGAAATAATGATCTATGGTTCGCTTGTCACGCATT
GAGTTTAAATGCCGTTCTTATTACACATAATGTAAAAGAATTTCAGCGAATTACAGATCTTCAGTGGCAAGATTGGACAA
AATAG

Upstream 100 bases:

>100_bases
AAACAGATGATTTTCTTGCGTTATTTGAAGGATTTGATGAGACCTTTATTCAAGCACTTGAAGCGCGTGATGATTTACCG
CCTCAGGAGCGAGAAAATTT

Downstream 100 bases:

>100_bases
ATAATTCTGATTTTTTATTTTACTTATGACATAATCTGTTTAACTCAACTAAAAAAGGACAAACCAATGCAAATTTTACA
CACTATGTTACGCGTGGGCG

Product: virulence-associated protein C

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MIYMLDTNIIIYLMKNRPKIIAERVSQLLPNDRLVMSFITYAELIKGAFGSQNYEQSIRAIELLTERVNVLYPNEQICLH
YGKWANTLKKQGRPIGNNDLWFACHALSLNAVLITHNVKEFQRITDLQWQDWTK

Sequences:

>Translated_134_residues
MIYMLDTNIIIYLMKNRPKIIAERVSQLLPNDRLVMSFITYAELIKGAFGSQNYEQSIRAIELLTERVNVLYPNEQICLH
YGKWANTLKKQGRPIGNNDLWFACHALSLNAVLITHNVKEFQRITDLQWQDWTK
>Mature_134_residues
MIYMLDTNIIIYLMKNRPKIIAERVSQLLPNDRLVMSFITYAELIKGAFGSQNYEQSIRAIELLTERVNVLYPNEQICLH
YGKWANTLKKQGRPIGNNDLWFACHALSLNAVLITHNVKEFQRITDLQWQDWTK

Specific function: Unknown

COG id: COG1487

COG function: function code R; Predicted nucleic acid-binding protein, contains PIN domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.nodosus virulence-associated protein C (vapC)

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y322_HAEIN (Q57122)

Other databases:

- EMBL:   L42023
- PIR:   G64061
- RefSeq:   NP_438487.1
- ProteinModelPortal:   Q57122
- GeneID:   949434
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0322
- NMPDR:   fig|71421.1.peg.302
- TIGR:   HI_0322
- HOGENOM:   HBG705734
- OMA:   NAVLITH
- ProtClustDB:   CLSK808403
- BioCyc:   HINF71421:HI_0322-MONOMER
- InterPro:   IPR002716
- InterPro:   IPR006596
- SMART:   SM00670

Pfam domain/function: PF01850 PIN

EC number: NA

Molecular weight: Translated: 15727; Mature: 15727

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYMLDTNIIIYLMKNRPKIIAERVSQLLPNDRLVMSFITYAELIKGAFGSQNYEQSIRA
CEEEEECCEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
IELLTERVNVLYPNEQICLHYGKWANTLKKQGRPIGNNDLWFACHALSLNAVLITHNVKE
HHHHHHHHHEECCCCCEEEEECHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEEEECCHHH
FQRITDLQWQDWTK
HHHHHCCCCCCCCC
>Mature Secondary Structure
MIYMLDTNIIIYLMKNRPKIIAERVSQLLPNDRLVMSFITYAELIKGAFGSQNYEQSIRA
CEEEEECCEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
IELLTERVNVLYPNEQICLHYGKWANTLKKQGRPIGNNDLWFACHALSLNAVLITHNVKE
HHHHHHHHHEECCCCCEEEEECHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEEEECCHHH
FQRITDLQWQDWTK
HHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800