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The map label for this gene is yqgF [C]

Identifier: 16272260

GI number: 16272260

Start: 339194

End: 339613

Strand: Direct

Name: yqgF [C]

Synonym: HI0305

Alternate gene names: 16272260

Gene position: 339194-339613 (Clockwise)

Preceding gene: 16272259

Following gene: 16272262

Centisome position: 18.53

GC content: 40.48

Gene sequence:

>420_bases
ATGGGAATTACCGCTCTGGCTTTTGATTTTGGCACTAAAAGTATCGGTTGTGCCATAGGACAAAGTATTACTGGCACAGC
ACAAGCCTTGCCCGCTTTTAAGGCGCAAGATGGCATCCCAAATTGGGAAGCGATCGAAAAATGTTTGAAAGAATGGAAAC
CAGATGTTGTCATTGTTGGTCTTCCTCTAAATATGGACGGAACAGAACAAGATCTCACTCTACGTGCTCGTAAATTTGCA
AATCGTTTACAAGGTCGTTTTGGCGTTAATGTTCATTTACAAGATGAACGATTAACCACCACGCAAGCTCGTAGTGAGAT
TTTTGAACGTGGTGGTTTTAAAGCATTAAAAAAAGGCAAAATCGATGGAGTGTCAGCTTGTTTAATTTTAGAGAGCTGGT
TTGAATACGCTGAATATTAG

Upstream 100 bases:

>100_bases
TTTTATTTGATATGCCCTATGAAGATCGTTATGCTGCAGCCAATCAGTTACTTGGTATTCATCCTTATAATTTTGCGTTA
GCGCAAGTGGGGCATAGTTA

Downstream 100 bases:

>100_bases
ATTCACATTGTAAAAATAAACTTCATTTTAGAATGATTAAAGCGCGATTTTATAATCTCGCTTTTTCGCCACCAAATTCA
TCTAATAAATTTTCGGTGAG

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MGITALAFDFGTKSIGCAIGQSITGTAQALPAFKAQDGIPNWEAIEKCLKEWKPDVVIVGLPLNMDGTEQDLTLRARKFA
NRLQGRFGVNVHLQDERLTTTQARSEIFERGGFKALKKGKIDGVSACLILESWFEYAEY

Sequences:

>Translated_139_residues
MGITALAFDFGTKSIGCAIGQSITGTAQALPAFKAQDGIPNWEAIEKCLKEWKPDVVIVGLPLNMDGTEQDLTLRARKFA
NRLQGRFGVNVHLQDERLTTTQARSEIFERGGFKALKKGKIDGVSACLILESWFEYAEY
>Mature_138_residues
GITALAFDFGTKSIGCAIGQSITGTAQALPAFKAQDGIPNWEAIEKCLKEWKPDVVIVGLPLNMDGTEQDLTLRARKFAN
RLQGRFGVNVHLQDERLTTTQARSEIFERGGFKALKKGKIDGVSACLILESWFEYAEY

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=135, Percent_Identity=70.3703703703704, Blast_Score=203, Evalue=3e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_HAEI8 (Q4QNN8)

Other databases:

- EMBL:   CP000057
- RefSeq:   YP_248019.1
- ProteinModelPortal:   Q4QNN8
- SMR:   Q4QNN8
- STRING:   Q4QNN8
- GeneID:   3429739
- GenomeReviews:   CP000057_GR
- KEGG:   hit:NTHI0416
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   ESYFENQ
- PhylomeDB:   Q4QNN8
- ProtClustDB:   PRK00109
- BioCyc:   HINF281310:NTHI0416-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15340; Mature: 15209

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGITALAFDFGTKSIGCAIGQSITGTAQALPAFKAQDGIPNWEAIEKCLKEWKPDVVIVG
CCCEEEEEECCCCHHHHHHCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
LPLNMDGTEQDLTLRARKFANRLQGRFGVNVHLQDERLTTTQARSEIFERGGFKALKKGK
ECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCHHHHHCCC
IDGVSACLILESWFEYAEY
CCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GITALAFDFGTKSIGCAIGQSITGTAQALPAFKAQDGIPNWEAIEKCLKEWKPDVVIVG
CCEEEEEECCCCHHHHHHCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
LPLNMDGTEQDLTLRARKFANRLQGRFGVNVHLQDERLTTTQARSEIFERGGFKALKKGK
ECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCHHHHHCCC
IDGVSACLILESWFEYAEY
CCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA