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The map label for this gene is ppdD

Identifier: 16272254

GI number: 16272254

Start: 333647

End: 334096

Strand: Reverse

Name: ppdD

Synonym: HI0299

Alternate gene names: 16272254

Gene position: 334096-333647 (Counterclockwise)

Preceding gene: 16272261

Following gene: 16272253

Centisome position: 18.26

GC content: 38.22

Gene sequence:

>450_bases
ATGAAATTAACAACACTGCAAACCTTGAAAAAAGGGTTTACATTAATCGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACCATCGCAATTCCTTCTTATCAAAATTATACCAAAAAAGCTGCGGTATCCGAATTACTGCAAGCGTCTGCGC
CTTATAAGGCTGATGTGGAATTATGTGTATATAGCACAAATGAAACAACAAGCTGTACAGGGGGAAAAAATGGTATTGCA
GCGGATATAAAGACAGCAAAAGGCTATGTAGCCTCAGTTATCACTCAATCAGGTGGTATTACAGTAAAAGGGAATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTAAAGGTAATGCTGCAGCAGGTGTAACTTGGACAACAACCTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACAAAATGA

Upstream 100 bases:

>100_bases
TTTGCGATCAGGATCGCAGAAAAAGTGCGGTCAATTTTACAAACAAATTTTTCCTTTTCACAATGTCGTTGCCAACAAAG
GCTTAATAAAAGGAAAATGA

Downstream 100 bases:

>100_bases
CGAGCTATGCTTTACTTCATACTCAGCGTGTAACCGCTAAAAATGGCGAAGTATTTACGATCTCGCCAGATTTATGGGAA
CGCAATCAGCAGCAACAATC

Product: prepilin peptidase-dependent protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MKLTTLQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTNETTSCTGGKNGIA
ADIKTAKGYVASVITQSGGITVKGNGTLANMEYILQAKGNAAAGVTWTTTCKGTDASLFPANFCGSVTK

Sequences:

>Translated_149_residues
MKLTTLQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTNETTSCTGGKNGIA
ADIKTAKGYVASVITQSGGITVKGNGTLANMEYILQAKGNAAAGVTWTTTCKGTDASLFPANFCGSVTK
>Mature_149_residues
MKLTTLQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTNETTSCTGGKNGIA
ADIKTAKGYVASVITQSGGITVKGNGTLANMEYILQAKGNAAAGVTWTTTCKGTDASLFPANFCGSVTK

Specific function: Not Yet Known. [C]

COG id: COG4969

COG function: function code NU; Tfp pilus assembly protein, major pilin PilA

Gene ontology:

Cell location: Fimbrium

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-Me-Phe pilin family

Homologues:

Organism=Escherichia coli, GI1786297, Length=124, Percent_Identity=41.9354838709677, Blast_Score=103, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PPDD_HAEIN (P44623)

Other databases:

- EMBL:   L42023
- PIR:   C64147
- RefSeq:   NP_438466.1
- ProteinModelPortal:   P44623
- SMR:   P44623
- GeneID:   949521
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0299
- NMPDR:   fig|71421.1.peg.281
- TIGR:   HI_0299
- HOGENOM:   HBG741643
- OMA:   KADVELC
- ProtClustDB:   CLSK869956
- BioCyc:   HINF71421:HI_0299-MONOMER
- GO:   GO:0009289
- InterPro:   IPR012902
- InterPro:   IPR001120
- TIGRFAMs:   TIGR02532

Pfam domain/function: PF07963 N_methyl

EC number: NA

Molecular weight: Translated: 15509; Mature: 15509

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTTLQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCEE
LCVYSTNETTSCTGGKNGIAADIKTAKGYVASVITQSGGITVKGNGTLANMEYILQAKGN
EEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHEECCCCEEEECCCCEEEEEEEEEECCC
AAAGVTWTTTCKGTDASLFPANFCGSVTK
CCCCCEEEEECCCCCCCCCCHHCCCCCCC
>Mature Secondary Structure
MKLTTLQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCEE
LCVYSTNETTSCTGGKNGIAADIKTAKGYVASVITQSGGITVKGNGTLANMEYILQAKGN
EEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHEECCCCEEEECCCCEEEEEEEEEECCC
AAAGVTWTTTCKGTDASLFPANFCGSVTK
CCCCCEEEEECCCCCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800