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The map label for this gene is hofB

Identifier: 16272253

GI number: 16272253

Start: 332256

End: 333650

Strand: Reverse

Name: hofB

Synonym: HI0298

Alternate gene names: 16272253

Gene position: 333650-332256 (Counterclockwise)

Preceding gene: 16272254

Following gene: 16272252

Centisome position: 18.23

GC content: 37.92

Gene sequence:

>1395_bases
ATGACGAGCTATGCTTTACTTCATACTCAGCGTGTAACCGCTAAAAATGGCGAAGTATTTACGATCTCGCCAGATTTATG
GGAACGCAATCAGCAGCAACAATCCTTGCTCTTACGTTATTTTGCTTTGCCACTTAAAGAAGAAAATAATCGTCTCTGGC
TAGGGGTTGATTCTCTCTCCAATCTTTCAGCCTGTGAAACCATTGCGTTTATAACGGGAAAACCTGTCGAACCAATTTTG
TTAGAAAGCAGCCAACTCAAAGAACTGTTACAACAACTTACTCCGAACCAAATGCAAGTGGAAGAACAAGTTAAATTCTA
TCAACATCAAGAAACCCATTTTGAACAAGAAGATGATGAACCTGTTATCCGCTTACTTAATCAGATTTTTGAATCTGCCT
TACAAAAAAATGCCTCTGATATTCATTTAGAAACCTTGGCTGATCAATTTCAAGTGCGGTTTAGAATTGATGGAGTTTTA
CAACCACAACCCTTAATAAGCAAAATATTCGCCAATCGTATTATTTCACGCTTAAAATTACTGGCTAAATTAGATATTAG
TGAAAATCGACTTCCACAAGATGGGCGATTTCAATTTAAAACGACTTTTTCCGATATTCTTGATTTTCGCCTTTCAACCT
TACCAACCCATTGGGGCGAGAAAATCGTGTTGCGAGCGCAACAAAATAAACCAGTAGAACTTAGCTTTTCTGAATTAGGT
ATGACAGAAAATCAGCAACAAGCATTTCAACGTGTGCTTAGCCAGCCACAAGGATTAATTTTAGTCACTGGCCCAACAGG
AAGTGGAAAAAGTATCTCACTTTACACCGCACTTCAATGGCTAAATACGCCTGATAAACATATTATGACTGCTGAAGATC
CCATTGAAATTGAGCTTGATGGCATTATTCAAAGCCAAATTAATCCACAGATTGGATTAGATTTTAACCGCCTATTACGC
ACTTTTTTACGTCAAGATCCCGATATTATTATGCTAGGCGAAATTCGCGATGAAGAAAGTGCAATGATTGCATTACGTGC
GGCACAAACTGGGCATTTGGTGCTTTCAACTTTACATACCAATGATGCAATTTCTGCTATTTCTCGCTTACAACAACTCG
GTATTCAACAGTATGAAATTAAAAACAGTTTATTGCTCGTTATTGCACAGCGTCTTGTACGAAAGCTTTGTTCAAAGTGC
GGTGGAAATTTAGCAAATTCTTGTGATTGCCATCAAGGTTATCGAGGTCGAATCGGCGTGTATCAATTTCTACATTGGCA
GCAGAATGACTATCAAACGGATTTTAAAAATTTACGTGCGAGTGGTTTAGAAAAAGTTAGCCAAGGCATAACGGATGAGA
AAGAAATTGAACGTGTGTTAGGTAAAAATTTATGA

Upstream 100 bases:

>100_bases
AAGCTAAAGGTAATGCTGCAGCAGGTGTAACTTGGACAACAACCTGCAAAGGAACGGATGCCTCTTTATTTCCAGCAAAT
TTTTGCGGAAGTGTCACAAA

Downstream 100 bases:

>100_bases
CTAAAAAACTCTTTTATTATCAAGCTAGTAACCCATTAAATCAGAAACAAAAAGGCTCAATTATTGCGGATACAAAACAA
CAAGCACACTTTCAATTAAT

Product: protein transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 463

Protein sequence:

>464_residues
MTSYALLHTQRVTAKNGEVFTISPDLWERNQQQQSLLLRYFALPLKEENNRLWLGVDSLSNLSACETIAFITGKPVEPIL
LESSQLKELLQQLTPNQMQVEEQVKFYQHQETHFEQEDDEPVIRLLNQIFESALQKNASDIHLETLADQFQVRFRIDGVL
QPQPLISKIFANRIISRLKLLAKLDISENRLPQDGRFQFKTTFSDILDFRLSTLPTHWGEKIVLRAQQNKPVELSFSELG
MTENQQQAFQRVLSQPQGLILVTGPTGSGKSISLYTALQWLNTPDKHIMTAEDPIEIELDGIIQSQINPQIGLDFNRLLR
TFLRQDPDIIMLGEIRDEESAMIALRAAQTGHLVLSTLHTNDAISAISRLQQLGIQQYEIKNSLLLVIAQRLVRKLCSKC
GGNLANSCDCHQGYRGRIGVYQFLHWQQNDYQTDFKNLRASGLEKVSQGITDEKEIERVLGKNL

Sequences:

>Translated_464_residues
MTSYALLHTQRVTAKNGEVFTISPDLWERNQQQQSLLLRYFALPLKEENNRLWLGVDSLSNLSACETIAFITGKPVEPIL
LESSQLKELLQQLTPNQMQVEEQVKFYQHQETHFEQEDDEPVIRLLNQIFESALQKNASDIHLETLADQFQVRFRIDGVL
QPQPLISKIFANRIISRLKLLAKLDISENRLPQDGRFQFKTTFSDILDFRLSTLPTHWGEKIVLRAQQNKPVELSFSELG
MTENQQQAFQRVLSQPQGLILVTGPTGSGKSISLYTALQWLNTPDKHIMTAEDPIEIELDGIIQSQINPQIGLDFNRLLR
TFLRQDPDIIMLGEIRDEESAMIALRAAQTGHLVLSTLHTNDAISAISRLQQLGIQQYEIKNSLLLVIAQRLVRKLCSKC
GGNLANSCDCHQGYRGRIGVYQFLHWQQNDYQTDFKNLRASGLEKVSQGITDEKEIERVLGKNL
>Mature_463_residues
TSYALLHTQRVTAKNGEVFTISPDLWERNQQQQSLLLRYFALPLKEENNRLWLGVDSLSNLSACETIAFITGKPVEPILL
ESSQLKELLQQLTPNQMQVEEQVKFYQHQETHFEQEDDEPVIRLLNQIFESALQKNASDIHLETLADQFQVRFRIDGVLQ
PQPLISKIFANRIISRLKLLAKLDISENRLPQDGRFQFKTTFSDILDFRLSTLPTHWGEKIVLRAQQNKPVELSFSELGM
TENQQQAFQRVLSQPQGLILVTGPTGSGKSISLYTALQWLNTPDKHIMTAEDPIEIELDGIIQSQINPQIGLDFNRLLRT
FLRQDPDIIMLGEIRDEESAMIALRAAQTGHLVLSTLHTNDAISAISRLQQLGIQQYEIKNSLLLVIAQRLVRKLCSKCG
GNLANSCDCHQGYRGRIGVYQFLHWQQNDYQTDFKNLRASGLEKVSQGITDEKEIERVLGKNL

Specific function: Unknown

COG id: COG2804

COG function: function code NU; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family

Homologues:

Organism=Escherichia coli, GI1786296, Length=387, Percent_Identity=44.4444444444444, Blast_Score=310, Evalue=1e-85,
Organism=Escherichia coli, GI1789723, Length=394, Percent_Identity=41.8781725888325, Blast_Score=307, Evalue=8e-85,
Organism=Escherichia coli, GI87082188, Length=280, Percent_Identity=33.2142857142857, Blast_Score=116, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): HOFB_HAEIN (P44622)

Other databases:

- EMBL:   L42023
- PIR:   E64060
- RefSeq:   NP_438465.1
- ProteinModelPortal:   P44622
- SMR:   P44622
- GeneID:   949957
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0298
- NMPDR:   fig|71421.1.peg.280
- TIGR:   HI_0298
- HOGENOM:   HBG485518
- OMA:   KLCSKCG
- ProtClustDB:   CLSK869957
- BioCyc:   HINF71421:HI_0298-MONOMER
- GO:   GO:0005622
- GO:   GO:0006810
- InterPro:   IPR003593
- InterPro:   IPR007831
- InterPro:   IPR001482
- SMART:   SM00382

Pfam domain/function: PF00437 GSPII_E; PF05157 GSPII_E_N

EC number: NA

Molecular weight: Translated: 52984; Mature: 52853

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS00662 T2SP_E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSYALLHTQRVTAKNGEVFTISPDLWERNQQQQSLLLRYFALPLKEENNRLWLGVDSLS
CCCEEEEEEEEEECCCCCEEEECCHHHHCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
NLSACETIAFITGKPVEPILLESSQLKELLQQLTPNQMQVEEQVKFYQHQETHFEQEDDE
CCHHHHEEEEECCCCCCHHEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCC
PVIRLLNQIFESALQKNASDIHLETLADQFQVRFRIDGVLQPQPLISKIFANRIISRLKL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
LAKLDISENRLPQDGRFQFKTTFSDILDFRLSTLPTHWGEKIVLRAQQNKPVELSFSELG
HHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEHHHCC
MTENQQQAFQRVLSQPQGLILVTGPTGSGKSISLYTALQWLNTPDKHIMTAEDPIEIELD
CCCCHHHHHHHHHCCCCCEEEEECCCCCCCCEEHHHHHHHCCCCCCCEEECCCCCEEEEC
GIIQSQINPQIGLDFNRLLRTFLRQDPDIIMLGEIRDEESAMIALRAAQTGHLVLSTLHT
CHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEECC
NDAISAISRLQQLGIQQYEIKNSLLLVIAQRLVRKLCSKCGGNLANSCDCHQGYRGRIGV
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
YQFLHWQQNDYQTDFKNLRASGLEKVSQGITDEKEIERVLGKNL
HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
TSYALLHTQRVTAKNGEVFTISPDLWERNQQQQSLLLRYFALPLKEENNRLWLGVDSLS
CCEEEEEEEEEECCCCCEEEECCHHHHCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
NLSACETIAFITGKPVEPILLESSQLKELLQQLTPNQMQVEEQVKFYQHQETHFEQEDDE
CCHHHHEEEEECCCCCCHHEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCC
PVIRLLNQIFESALQKNASDIHLETLADQFQVRFRIDGVLQPQPLISKIFANRIISRLKL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
LAKLDISENRLPQDGRFQFKTTFSDILDFRLSTLPTHWGEKIVLRAQQNKPVELSFSELG
HHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEHHHCC
MTENQQQAFQRVLSQPQGLILVTGPTGSGKSISLYTALQWLNTPDKHIMTAEDPIEIELD
CCCCHHHHHHHHHCCCCCEEEEECCCCCCCCEEHHHHHHHCCCCCCCEEECCCCCEEEEC
GIIQSQINPQIGLDFNRLLRTFLRQDPDIIMLGEIRDEESAMIALRAAQTGHLVLSTLHT
CHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEECC
NDAISAISRLQQLGIQQYEIKNSLLLVIAQRLVRKLCSKCGGNLANSCDCHQGYRGRIGV
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
YQFLHWQQNDYQTDFKNLRASGLEKVSQGITDEKEIERVLGKNL
HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800