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The map label for this gene is secD

Identifier: 16272200

GI number: 16272200

Start: 268478

End: 270328

Strand: Reverse

Name: secD

Synonym: HI0240

Alternate gene names: 16272200

Gene position: 270328-268478 (Counterclockwise)

Preceding gene: 16272201

Following gene: 16272199

Centisome position: 14.77

GC content: 38.36

Gene sequence:

>1851_bases
ATGTTAAACCGTTATCCATTATGGAAGAATTTGATGGTTATTTTTATTGTGGCCATCGGGATTTTATATTCTCTTCCAAA
TATTTATGGTGAAGATCCTGCGGTGCAAATTTCCGGTACACGCGGTCAAGAAGCAAATACTAGCGTGCTTGGACAAGTTC
AAGATGTGCTTAAAACCAATAATCTTCCAACCAAATCTATCGTGCTTGAGAATGGCTCAATTCTAGCTCGTTTTACTAAT
ACCGATGATCAACTTCTTGCTAAAGATAAAATTGCTGAACGTCTTGGCAATAATTACACCACCGCATTAAATCTTGCTCC
AGCCACTCCAGCTTGGTTAAGTATGTTTGGTGCGAATCCTATGAAATGGGGATTAGACTTACGCGGTGGGGTTCGTTTTT
TGATGGAAGTCGATATGAATGCCACACTTGTAAAACGCCAAGAGCAATTACAAGACAGTTTGCGTGGCGAACTTCGTAAA
GAAAAAATTCAATATACTGCCATTAAAAATACTGAGCATTTTGGTACGTTGATAACCTTAGCTAATGTGAGCCAGCGTGC
TAAAGCTGAGCGAATTATTCGCCAATTACATCCAACATTAGATATTACTGAGCCTGATGCTGATAGTATTAATTTAGGGC
TATCTACTGCAGCATTAAATGAAGCACGCGACTTAGCCATTGAGCAAAACTTAACGATTTTACGTAAACGTGTTGCTGAA
TTAGGTGTTGCAGAAGCGGTAATTCAACGTCAAGGTGCGGAGCGTATTGTGATTGAATTACCAGGTGTTCAAGACACTGC
ACGTGCAAAAGAAATTTTAGGGGCAACGGCAACACTTGAGTTTCGTATCGTAAATCAAAATGTTACGGCTGATGCTATTT
CTCGTAATATGTTACCAGCTGATTCGGAAGTTAAATATGATCGCCAAGGTCATCCTGTTGCATTATTTAAACGTGCCGTA
TTAGGCGGGGAGCATATTATTAATTCAAGCTCTGGTTTAGATCAGCATTCAAGCACGCCACAAGTGAGTGTAACCTTGGA
TAGCGAAGGTGGCGAGATTATGTCTCAGACCACTAAAAAATATTACAAGAAACCAATGGCAACGCTTTATGTTGAATATA
AAGATAACGGTAAAAAAGATGAAAATGGTAAAACTATTTTAGAAAAGCATGAAGAAGTGATTAATGTTGCAACAATTCAA
GGACGTTTTGGTTCTAATTTCCAAATTACTGGTGTTGATAGCATTGCGGAAGCACATAATCTTTCTACCTTATTGAAATC
TGGTGCATTAATTGCACCAATTCAAATTGTTGAAGAACGCACAATTGGCCCATCATTAGGTGCGCAAAACGTAGAGCAAG
GGATTAATGCGAGTCTTTGGGGATTAGTTGCTGTTATTGCCTTTATGTTGTTTTACTACAAAATGTTTGGTGTGATTGCA
AGTTTTGCACTTGTTATTAATATCGTATTACTTGTGGGATTAATGTCTATTTTACCCGGCGCGACACTTTCAATGCCGGG
TATTGCGGGTATCGTTTTAACTTTAGGTATGTCAGTAGATGCGAATGTATTGATTTTTGAACGTATTAAAGAAGAAATTC
GTAATGGTCGTTCAATTCAGCAAGCCATTAATGAAGGTTATAACGGCGCATTTACTTCTATTTTTGATGCAAACTTAACC
ACAATCTTAACCGCAATTATTCTATACGCGGTAGGAACAGGCCCAATTCAAGGTTTTGCGATTACGCTTTCACTTGGTGT
TGCGATTTCTATGTTTACCGCGATTACAGGAACTCGCGCATTAGTTAATGCCCTTTACGGTGGTAAACAACTTAAAAAAT
TATTAATTTAG

Upstream 100 bases:

>100_bases
TCTTCCTAAAGGTTCATTAAAATCACTTTAAGAATAACATTAAATTATTTTCCAGAGCCACGCATTGTGGCTCTGTGCGT
TAGAAAAGAAAAGGAAAACT

Downstream 100 bases:

>100_bases
GCGGGAAATGATGAAACTTTTTACAAAAGATAAAGACGGACATTTTATCCGTGAAATCAATGGGATAAAGCTCCCGTTCC
CATTGACTGAATTTATGAAA

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 616; Mature: 616

Protein sequence:

>616_residues
MLNRYPLWKNLMVIFIVAIGILYSLPNIYGEDPAVQISGTRGQEANTSVLGQVQDVLKTNNLPTKSIVLENGSILARFTN
TDDQLLAKDKIAERLGNNYTTALNLAPATPAWLSMFGANPMKWGLDLRGGVRFLMEVDMNATLVKRQEQLQDSLRGELRK
EKIQYTAIKNTEHFGTLITLANVSQRAKAERIIRQLHPTLDITEPDADSINLGLSTAALNEARDLAIEQNLTILRKRVAE
LGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATATLEFRIVNQNVTADAISRNMLPADSEVKYDRQGHPVALFKRAV
LGGEHIINSSSGLDQHSSTPQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKHEEVINVATIQ
GRFGSNFQITGVDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINASLWGLVAVIAFMLFYYKMFGVIA
SFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMSVDANVLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLT
TILTAIILYAVGTGPIQGFAITLSLGVAISMFTAITGTRALVNALYGGKQLKKLLI

Sequences:

>Translated_616_residues
MLNRYPLWKNLMVIFIVAIGILYSLPNIYGEDPAVQISGTRGQEANTSVLGQVQDVLKTNNLPTKSIVLENGSILARFTN
TDDQLLAKDKIAERLGNNYTTALNLAPATPAWLSMFGANPMKWGLDLRGGVRFLMEVDMNATLVKRQEQLQDSLRGELRK
EKIQYTAIKNTEHFGTLITLANVSQRAKAERIIRQLHPTLDITEPDADSINLGLSTAALNEARDLAIEQNLTILRKRVAE
LGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATATLEFRIVNQNVTADAISRNMLPADSEVKYDRQGHPVALFKRAV
LGGEHIINSSSGLDQHSSTPQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKHEEVINVATIQ
GRFGSNFQITGVDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINASLWGLVAVIAFMLFYYKMFGVIA
SFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMSVDANVLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLT
TILTAIILYAVGTGPIQGFAITLSLGVAISMFTAITGTRALVNALYGGKQLKKLLI
>Mature_616_residues
MLNRYPLWKNLMVIFIVAIGILYSLPNIYGEDPAVQISGTRGQEANTSVLGQVQDVLKTNNLPTKSIVLENGSILARFTN
TDDQLLAKDKIAERLGNNYTTALNLAPATPAWLSMFGANPMKWGLDLRGGVRFLMEVDMNATLVKRQEQLQDSLRGELRK
EKIQYTAIKNTEHFGTLITLANVSQRAKAERIIRQLHPTLDITEPDADSINLGLSTAALNEARDLAIEQNLTILRKRVAE
LGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATATLEFRIVNQNVTADAISRNMLPADSEVKYDRQGHPVALFKRAV
LGGEHIINSSSGLDQHSSTPQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKHEEVINVATIQ
GRFGSNFQITGVDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINASLWGLVAVIAFMLFYYKMFGVIA
SFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMSVDANVLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLT
TILTAIILYAVGTGPIQGFAITLSLGVAISMFTAITGTRALVNALYGGKQLKKLLI

Specific function: Involved in protein export

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily

Homologues:

Organism=Escherichia coli, GI1786609, Length=616, Percent_Identity=59.9025974025974, Blast_Score=752, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECD_HAEIN (P44591)

Other databases:

- EMBL:   L42023
- PIR:   I64056
- RefSeq:   NP_438410.1
- ProteinModelPortal:   P44591
- GeneID:   951150
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0240
- NMPDR:   fig|71421.1.peg.227
- TIGR:   HI_0240
- HOGENOM:   HBG302175
- OMA:   VNLWYGR
- ProtClustDB:   PRK05812
- BioCyc:   HINF71421:HI_0240-MONOMER
- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- PRINTS:   PR00702
- TIGRFAMs:   TIGR00916
- TIGRFAMs:   TIGR01129

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF

EC number: NA

Molecular weight: Translated: 66987; Mature: 66987

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xb6d6ed8)-; HASH(0xbdfdf20)-; HASH(0xbc71190)-; HASH(0xc18d0f8)-; HASH(0xbe5a62c)-; HASH(0xc690c90)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNRYPLWKNLMVIFIVAIGILYSLPNIYGEDPAVQISGTRGQEANTSVLGQVQDVLKTN
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCC
NLPTKSIVLENGSILARFTNTDDQLLAKDKIAERLGNNYTTALNLAPATPAWLSMFGANP
CCCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCC
MKWGLDLRGGVRFLMEVDMNATLVKRQEQLQDSLRGELRKEKIQYTAIKNTEHFGTLITL
CCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHH
ANVSQRAKAERIIRQLHPTLDITEPDADSINLGLSTAALNEARDLAIEQNLTILRKRVAE
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHCCHHHHHHHHHH
LGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATATLEFRIVNQNVTADAISRNMLPA
HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCEEEEEEEEECCCCCHHHHHCCCCCC
DSEVKYDRQGHPVALFKRAVLGGEHIINSSSGLDQHSSTPQVSVTLDSEGGEIMSQTTKK
CCCCCCCCCCCCHHHHHHHHHCCHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHH
YYKKPMATLYVEYKDNGKKDENGKTILEKHEEVINVATIQGRFGSNFQITGVDSIAEAHN
HHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHEEEEEECCCCCCEEEECHHHHHHHHH
LSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINASLWGLVAVIAFMLFYYKMFGVIA
HHHHHHCCCEEEHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
SFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMSVDANVLIFERIKEEIRNGRSIQ
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHH
QAINEGYNGAFTSIFDANLTTILTAIILYAVGTGPIQGFAITLSLGVAISMFTAITGTRA
HHHHCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHH
LVNALYGGKQLKKLLI
HHHHHHCHHHHHHHCH
>Mature Secondary Structure
MLNRYPLWKNLMVIFIVAIGILYSLPNIYGEDPAVQISGTRGQEANTSVLGQVQDVLKTN
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCC
NLPTKSIVLENGSILARFTNTDDQLLAKDKIAERLGNNYTTALNLAPATPAWLSMFGANP
CCCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCC
MKWGLDLRGGVRFLMEVDMNATLVKRQEQLQDSLRGELRKEKIQYTAIKNTEHFGTLITL
CCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHH
ANVSQRAKAERIIRQLHPTLDITEPDADSINLGLSTAALNEARDLAIEQNLTILRKRVAE
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHCCHHHHHHHHHH
LGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATATLEFRIVNQNVTADAISRNMLPA
HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCEEEEEEEEECCCCCHHHHHCCCCCC
DSEVKYDRQGHPVALFKRAVLGGEHIINSSSGLDQHSSTPQVSVTLDSEGGEIMSQTTKK
CCCCCCCCCCCCHHHHHHHHHCCHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHH
YYKKPMATLYVEYKDNGKKDENGKTILEKHEEVINVATIQGRFGSNFQITGVDSIAEAHN
HHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHEEEEEECCCCCCEEEECHHHHHHHHH
LSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINASLWGLVAVIAFMLFYYKMFGVIA
HHHHHHCCCEEEHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
SFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMSVDANVLIFERIKEEIRNGRSIQ
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHH
QAINEGYNGAFTSIFDANLTTILTAIILYAVGTGPIQGFAITLSLGVAISMFTAITGTRA
HHHHCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHH
LVNALYGGKQLKKLLI
HHHHHHCHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800