Click here to switch to the map view.

The map label for this gene is rarD [C]

Identifier: 16272186

GI number: 16272186

Start: 252758

End: 253660

Strand: Reverse

Name: rarD [C]

Synonym: HI0223

Alternate gene names: 16272186

Gene position: 253660-252758 (Counterclockwise)

Preceding gene: 16272188

Following gene: 16272182

Centisome position: 13.86

GC content: 36.99

Gene sequence:

>903_bases
ATGAAGTTCAAGATGAAAGTAGTCACTCAAGGCATATTATTGTGCATTTTTTCACAATGTTTATTTGGCATATTGTATTT
ATTTAGTATATGGCTCCAACCACTTAGCGGAACGGATGTTTTTGCGTGGCGTATGCTGACCATGATCTTTGGGTTACTTT
TAATTCTATTTCCGACTATTGGTTGCCGCTCTCTTTTGTCTCTTATTACGACAACTTTAGGAAAAAGTTGGACGCGTTGG
GTTTTATTTTTACTGGGGACACTAGATGCGGGAAGTCAATTCTGGCTCTTTATGTGGGCACCGCTAAATGGCGAAGGGAT
AAATATTGCGATGGGATATTTTCTTTTTCCGCTGATTATGGCTGTTTTAGGATGGGCTTGGTTAAAAGAACGTTTATCAT
TTATTCAGAAAATCGCGCTTTTACTGGCTGCTGCCGGTGTTGCACATGAATTATGGCACACTCAAAGTTTTTCATGGACA
AGCTTGTGGGTTTGTACGGTTTATCCATTTTATTATCTAAGCCGTAAATGGATGAAAATCCCTGCTCTACAAGGAATTAC
ATTGGATATTATTTTAATTTCGATTCCTTGTTTTATTTATATTCTTTCTCAAAGCGATACGCTTTCTTTGGTTACGCAAG
AATATCGTTATTGGTTATTGCTACCAGCACTTGGTATTGTGAGTGCGATTTCGCTTTCAGCCAACTTAAAATCAAGCCAA
CAAATTCCAGTTAGTATTTTTGCGGTGTTGAGTTATATTGAACCCATATTGCTTTTTTTAATAGCTGTCTTTGTGCTAGA
TAATCAAATAACCACAAGTGACTATTTTACTTATGTGCCTATTTGGTTAAGTCTCATTGTGATTGGCATAGAAGGGCTTT
TAAACAAAAAGAAAGTGCGGTGA

Upstream 100 bases:

>100_bases
TCAAAAATGTAACTATTGAGAAAAATATTATCACAATAAAAAATAAAGTTGAGATTTTTTATTGCCTTGGGCTTTTATAA
TAATCACATTGATGAGATGA

Downstream 100 bases:

>100_bases
AAATTAACCGCACTTATTAAAGTTACTGAAATAATTAGAAAGTATCTGAAAAAGTGATTTTTTATTCCCACTCGATTGTT
GCGGGTGGTTTTCCGCTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MKFKMKVVTQGILLCIFSQCLFGILYLFSIWLQPLSGTDVFAWRMLTMIFGLLLILFPTIGCRSLLSLITTTLGKSWTRW
VLFLLGTLDAGSQFWLFMWAPLNGEGINIAMGYFLFPLIMAVLGWAWLKERLSFIQKIALLLAAAGVAHELWHTQSFSWT
SLWVCTVYPFYYLSRKWMKIPALQGITLDIILISIPCFIYILSQSDTLSLVTQEYRYWLLLPALGIVSAISLSANLKSSQ
QIPVSIFAVLSYIEPILLFLIAVFVLDNQITTSDYFTYVPIWLSLIVIGIEGLLNKKKVR

Sequences:

>Translated_300_residues
MKFKMKVVTQGILLCIFSQCLFGILYLFSIWLQPLSGTDVFAWRMLTMIFGLLLILFPTIGCRSLLSLITTTLGKSWTRW
VLFLLGTLDAGSQFWLFMWAPLNGEGINIAMGYFLFPLIMAVLGWAWLKERLSFIQKIALLLAAAGVAHELWHTQSFSWT
SLWVCTVYPFYYLSRKWMKIPALQGITLDIILISIPCFIYILSQSDTLSLVTQEYRYWLLLPALGIVSAISLSANLKSSQ
QIPVSIFAVLSYIEPILLFLIAVFVLDNQITTSDYFTYVPIWLSLIVIGIEGLLNKKKVR
>Mature_300_residues
MKFKMKVVTQGILLCIFSQCLFGILYLFSIWLQPLSGTDVFAWRMLTMIFGLLLILFPTIGCRSLLSLITTTLGKSWTRW
VLFLLGTLDAGSQFWLFMWAPLNGEGINIAMGYFLFPLIMAVLGWAWLKERLSFIQKIALLLAAAGVAHELWHTQSFSWT
SLWVCTVYPFYYLSRKWMKIPALQGITLDIILISIPCFIYILSQSDTLSLVTQEYRYWLLLPALGIVSAISLSANLKSSQ
QIPVSIFAVLSYIEPILLFLIAVFVLDNQITTSDYFTYVPIWLSLIVIGIEGLLNKKKVR

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eamA transporter family

Homologues:

Organism=Escherichia coli, GI48994976, Length=210, Percent_Identity=27.6190476190476, Blast_Score=84, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y223_HAEIN (P44579)

Other databases:

- EMBL:   L42023
- RefSeq:   NP_438395.1
- GeneID:   951139
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0223
- NMPDR:   fig|71421.1.peg.213
- TIGR:   HI_0223
- HOGENOM:   HBG649355
- OMA:   AMGYFLF
- ProtClustDB:   CLSK808392
- BioCyc:   HINF71421:HI_0223-MONOMER
- GO:   GO:0006810
- InterPro:   IPR000620
- InterPro:   IPR004626
- TIGRFAMs:   TIGR00688

Pfam domain/function: PF00892 DUF6

EC number: NA

Molecular weight: Translated: 34182; Mature: 34182

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xb5844bc)-; HASH(0xc3d0f54)-; HASH(0x405c873c)-; HASH(0xb19db54)-; HASH(0xc24ea3c)-; HASH(0xc2e8b98)-; HASH(0xc467540)-; HASH(0xb55cadc)-;

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFKMKVVTQGILLCIFSQCLFGILYLFSIWLQPLSGTDVFAWRMLTMIFGLLLILFPTI
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GCRSLLSLITTTLGKSWTRWVLFLLGTLDAGSQFWLFMWAPLNGEGINIAMGYFLFPLIM
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH
AVLGWAWLKERLSFIQKIALLLAAAGVAHELWHTQSFSWTSLWVCTVYPFYYLSRKWMKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
PALQGITLDIILISIPCFIYILSQSDTLSLVTQEYRYWLLLPALGIVSAISLSANLKSSQ
CCCCCCHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
QIPVSIFAVLSYIEPILLFLIAVFVLDNQITTSDYFTYVPIWLSLIVIGIEGLLNKKKVR
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH
>Mature Secondary Structure
MKFKMKVVTQGILLCIFSQCLFGILYLFSIWLQPLSGTDVFAWRMLTMIFGLLLILFPTI
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GCRSLLSLITTTLGKSWTRWVLFLLGTLDAGSQFWLFMWAPLNGEGINIAMGYFLFPLIM
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH
AVLGWAWLKERLSFIQKIALLLAAAGVAHELWHTQSFSWTSLWVCTVYPFYYLSRKWMKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
PALQGITLDIILISIPCFIYILSQSDTLSLVTQEYRYWLLLPALGIVSAISLSANLKSSQ
CCCCCCHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
QIPVSIFAVLSYIEPILLFLIAVFVLDNQITTSDYFTYVPIWLSLIVIGIEGLLNKKKVR
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800