Click here to switch to the map view.

The map label for this gene is yfiO [C]

Identifier: 16272142

GI number: 16272142

Start: 189958

End: 190746

Strand: Direct

Name: yfiO [C]

Synonym: HI0177

Alternate gene names: 16272142

Gene position: 189958-190746 (Clockwise)

Preceding gene: 16272139

Following gene: 30995357

Centisome position: 10.38

GC content: 35.99

Gene sequence:

>789_bases
ATGCGTAAAATAAAATCTTTGGCATTGCTTGCCGTGGCAGCATTGGTTATTGGATGTTCAAGTGGTTCAAAAGATGTTGA
ACAAGCATCGGTAAATGAATTATACACAAAAGGTACAACATCATTACAAGAAGGTAGTTACTCTGAAGCCATTCGCTATT
TAAAAGCGACGACTGAGCGTTTTCCAGGTAGCGTTTATCAAGAACAAGCAATGTTAGATTTAATTTATGCAAATTATAAA
ACACAAGATTATACGCAAGTATTATTGATGGTAGATAGCTTTTTACATCAATTTACACAAAGCCCAAATCAAGCCTATGC
GGTATATATGGCTGGCTTAACTAATGCAGCAACAGGCGATAATTTCATTCAAGATTTTTTTGGAATTGACCGTGCTACAC
GTGAAACAACCTCTATGCGTACCGCTTTTTCTAATTTCCAAAACTTAGTTCGTGTATTCCCTAATAGCCCTTACTCACAA
GATGCTTTAGCTCGTATGGCTTATATTAAAGATGCACTGGCTCGTCACGAATTAGAGATTGCAAAATTCTATGCAAAACG
TAAAGCGTGGGTAGCAGTTGCAAATCGTGTGGTAGGAATGTTAAAACAATATCCTGATACTAAAGCAACTTATGAAGGAT
TATTTCTGATGCAGGAAGCTTATGAAAAAATGGGTTTAACCGCATTAGCAAATGATACTCAAAAAATTATTGATGCGAAT
AAAGATAAAACTTTTGCACCAATTGAAAAACCAAACGAGCCAGACTTAAAAGTGCCAGCAGTAAAATAG

Upstream 100 bases:

>100_bases
TCTCAAAAATTTTAAAAGTTGGCTTATTGATTAATGTTCTATACAATAGCGGACAATTGTATCTTATTTATTGGTTTTCG
TAAAAATTAAGGAAAAAACA

Downstream 100 bases:

>100_bases
CAATAACTGCAGAAAAATCGAATACTCTCTGCACCCTAAAAATTGAATAAAATTTAAACTAATTAAGGTGCAGATTTTTT
TATTTTTTATCAACTGAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MRKIKSLALLAVAALVIGCSSGSKDVEQASVNELYTKGTTSLQEGSYSEAIRYLKATTERFPGSVYQEQAMLDLIYANYK
TQDYTQVLLMVDSFLHQFTQSPNQAYAVYMAGLTNAATGDNFIQDFFGIDRATRETTSMRTAFSNFQNLVRVFPNSPYSQ
DALARMAYIKDALARHELEIAKFYAKRKAWVAVANRVVGMLKQYPDTKATYEGLFLMQEAYEKMGLTALANDTQKIIDAN
KDKTFAPIEKPNEPDLKVPAVK

Sequences:

>Translated_262_residues
MRKIKSLALLAVAALVIGCSSGSKDVEQASVNELYTKGTTSLQEGSYSEAIRYLKATTERFPGSVYQEQAMLDLIYANYK
TQDYTQVLLMVDSFLHQFTQSPNQAYAVYMAGLTNAATGDNFIQDFFGIDRATRETTSMRTAFSNFQNLVRVFPNSPYSQ
DALARMAYIKDALARHELEIAKFYAKRKAWVAVANRVVGMLKQYPDTKATYEGLFLMQEAYEKMGLTALANDTQKIIDAN
KDKTFAPIEKPNEPDLKVPAVK
>Mature_262_residues
MRKIKSLALLAVAALVIGCSSGSKDVEQASVNELYTKGTTSLQEGSYSEAIRYLKATTERFPGSVYQEQAMLDLIYANYK
TQDYTQVLLMVDSFLHQFTQSPNQAYAVYMAGLTNAATGDNFIQDFFGIDRATRETTSMRTAFSNFQNLVRVFPNSPYSQ
DALARMAYIKDALARHELEIAKFYAKRKAWVAVANRVVGMLKQYPDTKATYEGLFLMQEAYEKMGLTALANDTQKIIDAN
KDKTFAPIEKPNEPDLKVPAVK

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0169 (ComL) family

Homologues:

Organism=Escherichia coli, GI1788947, Length=245, Percent_Identity=43.265306122449, Blast_Score=206, Evalue=9e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y177_HAEIN (P44553)

Other databases:

- EMBL:   L42023
- PIR:   G64144
- RefSeq:   NP_438345.1
- GeneID:   951089
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0177
- NMPDR:   fig|71421.1.peg.166
- TIGR:   HI_0177
- HOGENOM:   HBG739476
- OMA:   ALARMAY
- ProtClustDB:   CLSK870586
- BioCyc:   HINF71421:HI_0177-MONOMER
- GO:   GO:0005488
- InterPro:   IPR017689
- InterPro:   IPR011990
- Gene3D:   G3DSA:1.25.40.10
- TIGRFAMs:   TIGR03302

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29348; Mature: 29348

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure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CCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023