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The map label for this gene is yjcD [C]

Identifier: 16272095

GI number: 16272095

Start: 140689

End: 142005

Strand: Direct

Name: yjcD [C]

Synonym: HI0125

Alternate gene names: 16272095

Gene position: 140689-142005 (Clockwise)

Preceding gene: 16272093

Following gene: 16272099

Centisome position: 7.69

GC content: 41.31

Gene sequence:

>1317_bases
ATGCCAACTTTAGAAAAAACATTTGAGCTCAAACAACGTGGTTCAACTGTTCGTCAAGAAATTATCGCGGGTTTAACCAC
TTTCTTAGCAATGGTTTATTCTGTCATCGTGGTACCCAATATGCTTGGTGCTGCAGGTTTCCCTGCGGAATCTGTCTTTA
TTGCCACCTGTTTAGTTGCAGGATTAGGCTCTATCTTAATCGGCTTATGGGCAAATGCACCAATGGCAATTGGTTGTGCA
ATTTCTCTTACTGCTTTTACAGCATTTAGCTTAGTGATTGGTCAAAAGGTCGCCATTCCCGTTGCGCTAGGCGCAGTATT
CTTAATGGGGGTTGTGTTTACCTTAATTTCTACCACAGGTATCCGTGCATGGATCTTGCGTAATTTACCATCCAATATCG
CTCATGGAGCAGGCATTGGTATCGGACTCTTTTTACTTTTAATTGCCGCAAACGGTGTTGGTTTAGTCGTCAGCAACCAA
GCTGGCTTACCAGTAAAATTAGGCGATTTCACCTCATTCCCAGTCATGATGTCCTTAATTGGCTTAGCGTTAATTATTGG
CCTTGAAAAAATGAAAATTAAAGGCGGCATTTTATGGGTAATTATCGCTATTACTATCGTAGGTTTAATTTTTGATCCAA
ATGTAAAATTTGGCGGAGAGATTTTCAAAATGCCAACCTTTGGTGAAAATTCTCTTTTCTTACAATTAGACTTTATGGGC
GCACTACAACCCGCAATCTTGCCTGTGGTATTTGCTTTGGTGATGACTGCCGTATTTGATGCAACCGGTACAATTCGTGC
AGTTGCAGGTCAAGCAGACTTGCTTGATAAAGATGGTCAAATTATCAATGGCGGTAAAGCCTTAACTTCAGATTCAATCA
GTAGCTTATTCTCAGGCTTATTCGGTACAGCACCAGCTGCCGTTTATATTGAGTCAGCAGCAGGGACAGCAGCAGGCGGT
AAAACAGGTATTACTGCTATCGTTGTTGGTGTGTTATTCCTATTAATGCTTTTCTTCCAACCATTAGCTTTCTTAGTGCC
AGGCTACGCAACTGCTCCAGCATTAATGTATGTTGGTTTATTAATGTTAAGCAATGTAAGCAAATTAGATTTCGATGATT
TCGTTGGCGCGATGAGCGGATTAATCTGCGCAGTGTTTATCGTACTTACCGCGAACATCGTAACAGGCATTATGTTAGGT
TTTGCGGCATTAGTAATTGGAAGAATCGTGAGTGGCGATATTAAACGCTTAAATGTAGGTACTGTGATTATTGCAATCGT
ACTTGTTGCATTCTATGCAGGCGGTTGGGCGATTTAG

Upstream 100 bases:

>100_bases
ATCCTAAATAAAACTCACGCAAACGTTTACTTATCGTTTTTATGATGTAAAATAGCGCACCTTATTACTTCCAATTTTTT
ACTTAACTTCAAGGAACACT

Downstream 100 bases:

>100_bases
TAACAGAAATAAGAAAAGGGAAAAGCCTTCCCCTCAATTTTAATCACAAAAGTGCGGTGAAATTTTACCGCACTTTTTTA
TACTTGGATTACTCTTTCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 437

Protein sequence:

>438_residues
MPTLEKTFELKQRGSTVRQEIIAGLTTFLAMVYSVIVVPNMLGAAGFPAESVFIATCLVAGLGSILIGLWANAPMAIGCA
ISLTAFTAFSLVIGQKVAIPVALGAVFLMGVVFTLISTTGIRAWILRNLPSNIAHGAGIGIGLFLLLIAANGVGLVVSNQ
AGLPVKLGDFTSFPVMMSLIGLALIIGLEKMKIKGGILWVIIAITIVGLIFDPNVKFGGEIFKMPTFGENSLFLQLDFMG
ALQPAILPVVFALVMTAVFDATGTIRAVAGQADLLDKDGQIINGGKALTSDSISSLFSGLFGTAPAAVYIESAAGTAAGG
KTGITAIVVGVLFLLMLFFQPLAFLVPGYATAPALMYVGLLMLSNVSKLDFDDFVGAMSGLICAVFIVLTANIVTGIMLG
FAALVIGRIVSGDIKRLNVGTVIIAIVLVAFYAGGWAI

Sequences:

>Translated_438_residues
MPTLEKTFELKQRGSTVRQEIIAGLTTFLAMVYSVIVVPNMLGAAGFPAESVFIATCLVAGLGSILIGLWANAPMAIGCA
ISLTAFTAFSLVIGQKVAIPVALGAVFLMGVVFTLISTTGIRAWILRNLPSNIAHGAGIGIGLFLLLIAANGVGLVVSNQ
AGLPVKLGDFTSFPVMMSLIGLALIIGLEKMKIKGGILWVIIAITIVGLIFDPNVKFGGEIFKMPTFGENSLFLQLDFMG
ALQPAILPVVFALVMTAVFDATGTIRAVAGQADLLDKDGQIINGGKALTSDSISSLFSGLFGTAPAAVYIESAAGTAAGG
KTGITAIVVGVLFLLMLFFQPLAFLVPGYATAPALMYVGLLMLSNVSKLDFDDFVGAMSGLICAVFIVLTANIVTGIMLG
FAALVIGRIVSGDIKRLNVGTVIIAIVLVAFYAGGWAI
>Mature_437_residues
PTLEKTFELKQRGSTVRQEIIAGLTTFLAMVYSVIVVPNMLGAAGFPAESVFIATCLVAGLGSILIGLWANAPMAIGCAI
SLTAFTAFSLVIGQKVAIPVALGAVFLMGVVFTLISTTGIRAWILRNLPSNIAHGAGIGIGLFLLLIAANGVGLVVSNQA
GLPVKLGDFTSFPVMMSLIGLALIIGLEKMKIKGGILWVIIAITIVGLIFDPNVKFGGEIFKMPTFGENSLFLQLDFMGA
LQPAILPVVFALVMTAVFDATGTIRAVAGQADLLDKDGQIINGGKALTSDSISSLFSGLFGTAPAAVYIESAAGTAAGGK
TGITAIVVGVLFLLMLFFQPLAFLVPGYATAPALMYVGLLMLSNVSKLDFDDFVGAMSGLICAVFIVLTANIVTGIMLGF
AALVIGRIVSGDIKRLNVGTVIIAIVLVAFYAGGWAI

Specific function: Unknown

COG id: COG2252

COG function: function code R; Permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily

Homologues:

Organism=Escherichia coli, GI1790499, Length=440, Percent_Identity=76.1363636363636, Blast_Score=652, Evalue=0.0,
Organism=Escherichia coli, GI48994909, Length=439, Percent_Identity=75.8542141230068, Blast_Score=625, Evalue=1e-180,
Organism=Escherichia coli, GI87082309, Length=423, Percent_Identity=39.0070921985816, Blast_Score=283, Evalue=2e-77,
Organism=Escherichia coli, GI1790150, Length=426, Percent_Identity=36.3849765258216, Blast_Score=251, Evalue=4e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y125_HAEIN (P44530)

Other databases:

- EMBL:   L42023
- PIR:   C64143
- RefSeq:   NP_438297.1
- GeneID:   951038
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0125
- TIGR:   HI_0125
- HOGENOM:   HBG750189
- OMA:   VKYQGFF
- ProtClustDB:   CLSK870037
- BioCyc:   HINF71421:HI_0125-MONOMER
- InterPro:   IPR006043
- PANTHER:   PTHR11119

Pfam domain/function: PF00860 Xan_ur_permease

EC number: NA

Molecular weight: Translated: 45299; Mature: 45168

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: PS01116 XANTH_URACIL_PERMASE

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc234580)-; HASH(0xc2014c4)-; HASH(0xb27311c)-; HASH(0xc1e6924)-; HASH(0xc1f6c50)-; HASH(0xbfedd84)-; HASH(0xc5369b0)-; HASH(0xc215aa4)-; HASH(0xc2132d8)-; HASH(0xc239c04)-; HASH(0xc3b785c)-; HASH(0xbfe6ec8)-; HASH(0xc248100)-;

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTLEKTFELKQRGSTVRQEIIAGLTTFLAMVYSVIVVPNMLGAAGFPAESVFIATCLVA
CCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
GLGSILIGLWANAPMAIGCAISLTAFTAFSLVIGQKVAIPVALGAVFLMGVVFTLISTTG
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
IRAWILRNLPSNIAHGAGIGIGLFLLLIAANGVGLVVSNQAGLPVKLGDFTSFPVMMSLI
HHHHHHHHCCHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCHHHHHHHH
GLALIIGLEKMKIKGGILWVIIAITIVGLIFDPNVKFGGEIFKMPTFGENSLFLQLDFMG
HHHHHHHHHHHEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEECHH
ALQPAILPVVFALVMTAVFDATGTIRAVAGQADLLDKDGQIINGGKALTSDSISSLFSGL
CCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHCCCCCCEEECCCCCCHHHHHHHHHHH
FGTAPAAVYIESAAGTAAGGKTGITAIVVGVLFLLMLFFQPLAFLVPGYATAPALMYVGL
HCCCCHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LMLSNVSKLDFDDFVGAMSGLICAVFIVLTANIVTGIMLGFAALVIGRIVSGDIKRLNVG
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
TVIIAIVLVAFYAGGWAI
HHHHHHHHHHHHCCCCCH
>Mature Secondary Structure 
PTLEKTFELKQRGSTVRQEIIAGLTTFLAMVYSVIVVPNMLGAAGFPAESVFIATCLVA
CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
GLGSILIGLWANAPMAIGCAISLTAFTAFSLVIGQKVAIPVALGAVFLMGVVFTLISTTG
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
IRAWILRNLPSNIAHGAGIGIGLFLLLIAANGVGLVVSNQAGLPVKLGDFTSFPVMMSLI
HHHHHHHHCCHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCHHHHHHHH
GLALIIGLEKMKIKGGILWVIIAITIVGLIFDPNVKFGGEIFKMPTFGENSLFLQLDFMG
HHHHHHHHHHHEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEECHH
ALQPAILPVVFALVMTAVFDATGTIRAVAGQADLLDKDGQIINGGKALTSDSISSLFSGL
CCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHCCCCCCEEECCCCCCHHHHHHHHHHH
FGTAPAAVYIESAAGTAAGGKTGITAIVVGVLFLLMLFFQPLAFLVPGYATAPALMYVGL
HCCCCHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LMLSNVSKLDFDDFVGAMSGLICAVFIVLTANIVTGIMLGFAALVIGRIVSGDIKRLNVG
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
TVIIAIVLVAFYAGGWAI
HHHHHHHHHHHHCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800