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The map label for this gene is cdaR [C]

Identifier: 16272067

GI number: 16272067

Start: 100475

End: 101581

Strand: Reverse

Name: cdaR [C]

Synonym: HI0093

Alternate gene names: 16272067

Gene position: 101581-100475 (Counterclockwise)

Preceding gene: 30995353

Following gene: 16272066

Centisome position: 5.55

GC content: 37.49

Gene sequence:

>1107_bases
ATGCAACTTGACAAATACACTGCCAAAAAAATTGTTAAACGTGCAATGAAGATCATTCATCACTCTGTAAATGTAATGGA
TCACGACGGTGTGATCATTGCGTCGGGAAATTCAACGCGTTTGAATCAACGGCACACAGGAGCGGTGTTGGCGTTGCGGG
AAAATCGTGTGGTAGAGATTGATCAAGCGTTGGCACAAAAATGGAATTTTGAAGCACAACCAGGGATTAATTTACCGATT
CATTATTTAGGCAAAAATATTGGAGTGGTGGGGATTTCTGGTGAGCCAACTCAGGTGAAACAATATGCCGAACTAGTGAA
AATGACGGCAGAACTTATTGTGGAACAACAGGCTTTACTCGAACAAGAAAGCTGGCATCGTCGTTACAAAGAAGAATTTA
TTTTACAATTATTACATTGCAATTTGAATTGGAAAGAGATGGAACAGCAGGCGAAATTTTTTTCTTTTGATTTAAATAAA
TCTCGTGTGGTTGTATTGATTAAGTTACTTAATCCAGCCCTGGATAATTTACAGAATCTGATCAATTATTTGGAACAGTC
TGAATTTGCACAGGATGTGGCAATTTTGTCCCTTGATCAGGTTGTGGTCTTAAAGACTTGGCAAAACTCCACCGTACTTT
CTGCTCAAATGAAAACGCTTTTACCTGCAGATTATTCAAAACAAGATTATAAAATTGCTGTAGGCGCTTGTCTAAATCTA
CCGCTTTTTGAGCAGCTTCCCTTGTCTTTTCAAAGTGCGCAAAGCACGCTTTCTTATGGATTAAAACATCATCCACGCAA
AGGTATTTATGTGTTTGATGAGCATCGATTGCCTGTGTTACTTGCTGGATTATCCCATTCTTGGCAAGGGAACGAATTGA
TAAAACCCCTTTCTCCCCTTTTCTCAGAAGAAAATGCGATACTTTATAAAACCCTTCAACAATATTTTTTATCAAATTGT
GATCTTTATCTCACTGCGGAAAAATTATTTGTTCACCCGAATACTTTGCGTTATCGATTGAACAAAATAGAGCAAATAAC
TGGCTTATTTTTCAATAAGATAGATGATAAATTAACGCTCTATCTCGGAACGTTGTTAGAACATTGA

Upstream 100 bases:

>100_bases
CGGGAGAATAGTCTCCCGTCTTTTCTTGCAGATAAAACAATATTTGACTAACTTTCTTTTTCTCAATATTTTATCTTCAT
TTATCTTCTTTATTACAAAT

Downstream 100 bases:

>100_bases
GGTTGTATAACTTTACAAAGTTTGATGATTTTTAACCGCACTTTTTGTTTGCTCTAATAAAGCATTTCCCCTATAAAACA
GAAATAATCTCCTTGGTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MQLDKYTAKKIVKRAMKIIHHSVNVMDHDGVIIASGNSTRLNQRHTGAVLALRENRVVEIDQALAQKWNFEAQPGINLPI
HYLGKNIGVVGISGEPTQVKQYAELVKMTAELIVEQQALLEQESWHRRYKEEFILQLLHCNLNWKEMEQQAKFFSFDLNK
SRVVVLIKLLNPALDNLQNLINYLEQSEFAQDVAILSLDQVVVLKTWQNSTVLSAQMKTLLPADYSKQDYKIAVGACLNL
PLFEQLPLSFQSAQSTLSYGLKHHPRKGIYVFDEHRLPVLLAGLSHSWQGNELIKPLSPLFSEENAILYKTLQQYFLSNC
DLYLTAEKLFVHPNTLRYRLNKIEQITGLFFNKIDDKLTLYLGTLLEH

Sequences:

>Translated_368_residues
MQLDKYTAKKIVKRAMKIIHHSVNVMDHDGVIIASGNSTRLNQRHTGAVLALRENRVVEIDQALAQKWNFEAQPGINLPI
HYLGKNIGVVGISGEPTQVKQYAELVKMTAELIVEQQALLEQESWHRRYKEEFILQLLHCNLNWKEMEQQAKFFSFDLNK
SRVVVLIKLLNPALDNLQNLINYLEQSEFAQDVAILSLDQVVVLKTWQNSTVLSAQMKTLLPADYSKQDYKIAVGACLNL
PLFEQLPLSFQSAQSTLSYGLKHHPRKGIYVFDEHRLPVLLAGLSHSWQGNELIKPLSPLFSEENAILYKTLQQYFLSNC
DLYLTAEKLFVHPNTLRYRLNKIEQITGLFFNKIDDKLTLYLGTLLEH
>Mature_368_residues
MQLDKYTAKKIVKRAMKIIHHSVNVMDHDGVIIASGNSTRLNQRHTGAVLALRENRVVEIDQALAQKWNFEAQPGINLPI
HYLGKNIGVVGISGEPTQVKQYAELVKMTAELIVEQQALLEQESWHRRYKEEFILQLLHCNLNWKEMEQQAKFFSFDLNK
SRVVVLIKLLNPALDNLQNLINYLEQSEFAQDVAILSLDQVVVLKTWQNSTVLSAQMKTLLPADYSKQDYKIAVGACLNL
PLFEQLPLSFQSAQSTLSYGLKHHPRKGIYVFDEHRLPVLLAGLSHSWQGNELIKPLSPLFSEENAILYKTLQQYFLSNC
DLYLTAEKLFVHPNTLRYRLNKIEQITGLFFNKIDDKLTLYLGTLLEH

Specific function: Seems To Regulate The Expression Of The Operons For The Enzymes Involved In D-Galactarate, D-Glucarate And D-Glycerate Utilization. [C]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family

Homologues:

Organism=Escherichia coli, GI87081694, Length=386, Percent_Identity=35.7512953367876, Blast_Score=232, Evalue=4e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y093_HAEIN (P44509)

Other databases:

- EMBL:   L42023
- PIR:   E64142
- RefSeq:   NP_438266.1
- GeneID:   950994
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0093
- NMPDR:   fig|71421.1.peg.92
- TIGR:   HI_0093
- HOGENOM:   HBG345376
- OMA:   EEFIYEW
- ProtClustDB:   CLSK892356
- BioCyc:   HINF71421:HI_0093-MONOMER
- InterPro:   IPR008599

Pfam domain/function: PF05651 Diacid_rec

EC number: NA

Molecular weight: Translated: 42251; Mature: 42251

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLDKYTAKKIVKRAMKIIHHSVNVMDHDGVIIASGNSTRLNQRHTGAVLALRENRVVEI
CCCHHHHHHHHHHHHHHHHHHHCCEEECCCEEEECCCCCCCCCCCCCEEEEEECCCEEHH
DQALAQKWNFEAQPGINLPIHYLGKNIGVVGISGEPTQVKQYAELVKMTAELIVEQQALL
HHHHHHHCCCCCCCCCCCCHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
EQESWHRRYKEEFILQLLHCNLNWKEMEQQAKFFSFDLNKSRVVVLIKLLNPALDNLQNL
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEECCCCCCEEEHHHHHHHHHHHHHHH
INYLEQSEFAQDVAILSLDQVVVLKTWQNSTVLSAQMKTLLPADYSKQDYKIAVGACLNL
HHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEHHHHHHHHCCCCCCCCCCEEEEEECCCC
PLFEQLPLSFQSAQSTLSYGLKHHPRKGIYVFDEHRLPVLLAGLSHSWQGNELIKPLSPL
CCHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEECCCCCCCCCCHHHHHHHH
FSEENAILYKTLQQYFLSNCDLYLTAEKLFVHPNTLRYRLNKIEQITGLFFNKIDDKLTL
HCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHH
YLGTLLEH
HHHHHHCC
>Mature Secondary Structure
MQLDKYTAKKIVKRAMKIIHHSVNVMDHDGVIIASGNSTRLNQRHTGAVLALRENRVVEI
CCCHHHHHHHHHHHHHHHHHHHCCEEECCCEEEECCCCCCCCCCCCCEEEEEECCCEEHH
DQALAQKWNFEAQPGINLPIHYLGKNIGVVGISGEPTQVKQYAELVKMTAELIVEQQALL
HHHHHHHCCCCCCCCCCCCHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
EQESWHRRYKEEFILQLLHCNLNWKEMEQQAKFFSFDLNKSRVVVLIKLLNPALDNLQNL
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEECCCCCCEEEHHHHHHHHHHHHHHH
INYLEQSEFAQDVAILSLDQVVVLKTWQNSTVLSAQMKTLLPADYSKQDYKIAVGACLNL
HHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEHHHHHHHHCCCCCCCCCCEEEEEECCCC
PLFEQLPLSFQSAQSTLSYGLKHHPRKGIYVFDEHRLPVLLAGLSHSWQGNELIKPLSPL
CCHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEECCCCCCCCCCHHHHHHHH
FSEENAILYKTLQQYFLSNCDLYLTAEKLFVHPNTLRYRLNKIEQITGLFFNKIDDKLTL
HCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHH
YLGTLLEH
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800