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The map label for this gene is yccA [C]

Identifier: 16272019

GI number: 16272019

Start: 46309

End: 46971

Strand: Reverse

Name: yccA [C]

Synonym: HI0044

Alternate gene names: 16272019

Gene position: 46971-46309 (Counterclockwise)

Preceding gene: 16272020

Following gene: 16272018

Centisome position: 2.57

GC content: 36.05

Gene sequence:

>663_bases
ATGCAATCACGTCTTATTGTGGATGCTCAAAAAGAATCGTTACTCAGCACACATAAAGTGTTGCGTAACACGTATTTTTT
ACTGGGATTAACAATGGCTTTTTCAGCGGTTGTTGCGTTTATTTCAATGAGCTTAAACTTGCCTTATCCAAATATTATTG
TGTTACTAGTGGGTTTTTATGGCTTACTTTTCTTAACCAATAAATTAGCTGATCGCCCTGCTGGTATTTTGGCGGCCTTT
GCTTTCACTGGATTTATGGGATACACCATCGGGCCAATTTTAAATATGTATGTGGCACGTGGAATGGAAGATTTGATTAT
GCTTGCATTCGCAGGAACTGCTATCGTATTTTTTGCGTGTTCCGCTTATGTATTGACTACGAAAAAAGATATGTCATTCT
TATCAAGCGCAATGTTCGCATTATTTATTGTGTTATTGCTTGGTATGGTGGCGAGTTTCTTCTTCCAAATTCCTGCTTTA
TCGGTCGCAATTAGTGCATTATTTGTAGTGTTCTCAACAATGACCATTTTGTATGAAACCAGTAATATTATTCACGGTGG
AGAAACAAATTACATTCGCGCAACCGTGAACATCTATGTTTCAATCTACAATTTATTCTTGAGTTTATTAAGATTACTTT
CTATCTTTTCAAGTGATGAATAA

Upstream 100 bases:

>100_bases
TATTCATTTTGATGAAATTAATTCCATTAATACCATTGACTTTTTTATCCCTAGCCCTTACTTTACAGAAGACTTTTTAT
TTATTTTACAAGGAGCTTTT

Downstream 100 bases:

>100_bases
TGATTGATTTTTGACTTTATAACCCCACTATTTAGTGGGGTTATTTTTTGGGATAGGCAATGGAAAAACAAATTTTTGAA
CATTCAGTTAATGTAGAGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MQSRLIVDAQKESLLSTHKVLRNTYFLLGLTMAFSAVVAFISMSLNLPYPNIIVLLVGFYGLLFLTNKLADRPAGILAAF
AFTGFMGYTIGPILNMYVARGMEDLIMLAFAGTAIVFFACSAYVLTTKKDMSFLSSAMFALFIVLLLGMVASFFFQIPAL
SVAISALFVVFSTMTILYETSNIIHGGETNYIRATVNIYVSIYNLFLSLLRLLSIFSSDE

Sequences:

>Translated_220_residues
MQSRLIVDAQKESLLSTHKVLRNTYFLLGLTMAFSAVVAFISMSLNLPYPNIIVLLVGFYGLLFLTNKLADRPAGILAAF
AFTGFMGYTIGPILNMYVARGMEDLIMLAFAGTAIVFFACSAYVLTTKKDMSFLSSAMFALFIVLLLGMVASFFFQIPAL
SVAISALFVVFSTMTILYETSNIIHGGETNYIRATVNIYVSIYNLFLSLLRLLSIFSSDE
>Mature_220_residues
MQSRLIVDAQKESLLSTHKVLRNTYFLLGLTMAFSAVVAFISMSLNLPYPNIIVLLVGFYGLLFLTNKLADRPAGILAAF
AFTGFMGYTIGPILNMYVARGMEDLIMLAFAGTAIVFFACSAYVLTTKKDMSFLSSAMFALFIVLLLGMVASFFFQIPAL
SVAISALFVVFSTMTILYETSNIIHGGETNYIRATVNIYVSIYNLFLSLLRLLSIFSSDE

Specific function: Unknown

COG id: COG0670

COG function: function code R; Integral membrane protein, interacts with FtsH

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BI1 family

Homologues:

Organism=Escherichia coli, GI1787205, Length=210, Percent_Identity=63.3333333333333, Blast_Score=271, Evalue=4e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y044_HAEIN (P44477)

Other databases:

- EMBL:   L42023
- PIR:   A64141
- RefSeq:   NP_438217.1
- GeneID:   950935
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0044
- TIGR:   HI_0044
- HOGENOM:   HBG595196
- OMA:   TYALLSM
- ProtClustDB:   CLSK870081
- BioCyc:   HINF71421:HI_0044-MONOMER
- InterPro:   IPR006213
- InterPro:   IPR006214
- PANTHER:   PTHR23291

Pfam domain/function: PF01027 UPF0005

EC number: NA

Molecular weight: Translated: 24246; Mature: 24246

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: PS01243 BI1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xba90564)-; HASH(0xbcdab70)-; HASH(0xbcbe7b8)-; HASH(0xbb2f878)-; HASH(0xbccb728)-; HASH(0xbb9d468)-; HASH(0xbcd1a10)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSRLIVDAQKESLLSTHKVLRNTYFLLGLTMAFSAVVAFISMSLNLPYPNIIVLLVGFY
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
GLLFLTNKLADRPAGILAAFAFTGFMGYTIGPILNMYVARGMEDLIMLAFAGTAIVFFAC
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
SAYVLTTKKDMSFLSSAMFALFIVLLLGMVASFFFQIPALSVAISALFVVFSTMTILYET
HHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNIIHGGETNYIRATVNIYVSIYNLFLSLLRLLSIFSSDE
CCCEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCH
>Mature Secondary Structure
MQSRLIVDAQKESLLSTHKVLRNTYFLLGLTMAFSAVVAFISMSLNLPYPNIIVLLVGFY
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
GLLFLTNKLADRPAGILAAFAFTGFMGYTIGPILNMYVARGMEDLIMLAFAGTAIVFFAC
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
SAYVLTTKKDMSFLSSAMFALFIVLLLGMVASFFFQIPALSVAISALFVVFSTMTILYET
HHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNIIHGGETNYIRATVNIYVSIYNLFLSLLRLLSIFSSDE
CCCEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800