| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082759
Identifier: 99082759
GI number: 99082759
Start: 3088950
End: 3090503
Strand: Direct
Name: 99082759
Synonym: TM1040_2919
Alternate gene names: NA
Gene position: 3088950-3090503 (Clockwise)
Preceding gene: 99082758
Following gene: 99082766
Centisome position: 96.5
GC content: 60.55
Gene sequence:
>1554_bases ATGAGCTATTACCGTGCGGCGGTCTGCGCCGCACTCTGCTTTTTCAGCTTTGGCCAACCGGTTCTGGGACAGGATGTAAC GCTGTCCTCGCCCGATGGCGCCATCGAGGTGAGTGGAGATCTGCTGGGTTTTGATGGTGAGTTCTACCGTGTGGAGACGC AGTTTGGCGAGCTGACCGTGGATGGCTCCGGGGTGCGCTGTGAGGGTCCGGGCTGCCCTAGCCTGTCTGACTTCGTTGCC GAGATCACCTTTGCCGGGTCCTCCACCATGGCAGAGGTTCTCCTGCCCGCGCTGATCGAGGGTTTCTCTCTGCGCAACGG ATATCAGACCGCCCGCATGCAACTGGATTCGCGTCAGTTTGAATACACGCTGTCACGCGACGGCCGGGTTGCGGGGCGGT TCACCTTTCAAGTCAGCAATACGGATGAAGGCTTTGCAGATGTCCTGGCCAACCAGGCCGACATCGTGATGGCATTGCGT GAAATCCGGGAAGCCGAGCACCTATTGGCGTCCGAGGCAGGTCTTGGCGATATGTCTTTGTCCAATCGGGGGCGGGTGCT GGCCCTGGATGCCATGGTGCCTGTTGTGGCACCGTCGAATCCGGTGCGACGGATCTCGCTGCCTCAACTTGCGGATATTT ACGCGGGCAAGATCACCAATTGGTCCGAGCTTGGCGGCGCTGACGCACCCATTTCGGTGCATTTGCCCGTTGCTGGGGCA GGGTTGGCGCAGGCTGTCGAGGACAAGCTCTTGTCACCTGCCGGGCTCGAACTCTCCGAGAGTATTCGCCGCCATGATCG CGGCAGCACGCTTGTGCGGACGGTCGCCACCGACCCGTTTGCGATTGGCATCGCGAGCTATGCCGAAACTGGCCAGACCC GGATGCTCACGCTTACGGGGGCTTGTGGGTTTTCGCTGTCAGCGGGACGGCGCAGTATCAAGACCGAGGACTACCCTCTG ACTGCGCCGATGTTTCTCTATCTGCCTGCCCACCGCCTGCCACGCATTGCCCGGGACTTTTTGACCTATGTGCGTGGCCC TGCTGCCCAGATCGTGATCCGTCGCGCAGGGTTTGTGGATCAGGCACCGGAGCATATCCCGCTGCGTCTTCAGGGGGAAC GGCTCAGCAATGCGATACGATCTGCAGGGGAAGACATCCCGCTCAGCGAGCTGCAACGATTGATTTCGGGGCTCGATGGA TTGCAGCGATTGACCACCTCATTTCGATTTGAGGCCGGATCGTCCAGGCCTGATGCGCAATCCCGCAACAATATCGATTT GCTCGCGCGTGAACTTGAAGCCGGAGTCTACGACGGTAAGCGCTTGGTTTTTGTGGGATTCTCAGACGGTGAGGGGCCAG CGGAGGGCAACCGTGCCATCGCGATGAAGCGCGCGGAGTCGGTGCGCCGCGCCGTGGAGCGCGCAGCCGAAACCGCAAAT CTGGATCGCATTTCGATCGAGACAGCGGCTTACGGCGAAGCACTTCCCATTGCCTGCGATGACAGTGCCTGGGGTCGACA AGCCAACCGGCGTGTCGAAGTCTGGATCAGGTAA
Upstream 100 bases:
>100_bases TCCCCGATTGTTCGGCGGTTGGTGATTTTCTGGTGTTGAATAATCTCGTCGAAAGCCTGAAAATCGCCTCCAACTAACTG GGGCGACACCGGGATTTCTC
Downstream 100 bases:
>100_bases GCCTACGCGCTTTGCGTTTCATGACGATCTGTCCAACGGAGGCAGTATCGTTTGTCTGCGGCCAGGTCTGCGATTCAGCG TAACCACATGCGCTGTATCT
Product: OmpA/MotB
Products: NA
Alternate protein names: OmpA/MotB; OmpA/MotB Domain-Containing Protein; OmpA Domain Protein; Phosphate ABC Transporter; OmpA/MotB Domain Protein; Phosphate-Related ABC Transporter Exported Protein; Phosphate ABC Transporter Periplasmic Protein; OmpA Domain-Containing Protein; Serine/Threonine Protein Kinase; NB Family Protein; PstS ABC-Type Phosphate Transport System Protein
Number of amino acids: Translated: 517; Mature: 516
Protein sequence:
>517_residues MSYYRAAVCAALCFFSFGQPVLGQDVTLSSPDGAIEVSGDLLGFDGEFYRVETQFGELTVDGSGVRCEGPGCPSLSDFVA EITFAGSSTMAEVLLPALIEGFSLRNGYQTARMQLDSRQFEYTLSRDGRVAGRFTFQVSNTDEGFADVLANQADIVMALR EIREAEHLLASEAGLGDMSLSNRGRVLALDAMVPVVAPSNPVRRISLPQLADIYAGKITNWSELGGADAPISVHLPVAGA GLAQAVEDKLLSPAGLELSESIRRHDRGSTLVRTVATDPFAIGIASYAETGQTRMLTLTGACGFSLSAGRRSIKTEDYPL TAPMFLYLPAHRLPRIARDFLTYVRGPAAQIVIRRAGFVDQAPEHIPLRLQGERLSNAIRSAGEDIPLSELQRLISGLDG LQRLTTSFRFEAGSSRPDAQSRNNIDLLARELEAGVYDGKRLVFVGFSDGEGPAEGNRAIAMKRAESVRRAVERAAETAN LDRISIETAAYGEALPIACDDSAWGRQANRRVEVWIR
Sequences:
>Translated_517_residues MSYYRAAVCAALCFFSFGQPVLGQDVTLSSPDGAIEVSGDLLGFDGEFYRVETQFGELTVDGSGVRCEGPGCPSLSDFVA EITFAGSSTMAEVLLPALIEGFSLRNGYQTARMQLDSRQFEYTLSRDGRVAGRFTFQVSNTDEGFADVLANQADIVMALR EIREAEHLLASEAGLGDMSLSNRGRVLALDAMVPVVAPSNPVRRISLPQLADIYAGKITNWSELGGADAPISVHLPVAGA GLAQAVEDKLLSPAGLELSESIRRHDRGSTLVRTVATDPFAIGIASYAETGQTRMLTLTGACGFSLSAGRRSIKTEDYPL TAPMFLYLPAHRLPRIARDFLTYVRGPAAQIVIRRAGFVDQAPEHIPLRLQGERLSNAIRSAGEDIPLSELQRLISGLDG LQRLTTSFRFEAGSSRPDAQSRNNIDLLARELEAGVYDGKRLVFVGFSDGEGPAEGNRAIAMKRAESVRRAVERAAETAN LDRISIETAAYGEALPIACDDSAWGRQANRRVEVWIR >Mature_516_residues SYYRAAVCAALCFFSFGQPVLGQDVTLSSPDGAIEVSGDLLGFDGEFYRVETQFGELTVDGSGVRCEGPGCPSLSDFVAE ITFAGSSTMAEVLLPALIEGFSLRNGYQTARMQLDSRQFEYTLSRDGRVAGRFTFQVSNTDEGFADVLANQADIVMALRE IREAEHLLASEAGLGDMSLSNRGRVLALDAMVPVVAPSNPVRRISLPQLADIYAGKITNWSELGGADAPISVHLPVAGAG LAQAVEDKLLSPAGLELSESIRRHDRGSTLVRTVATDPFAIGIASYAETGQTRMLTLTGACGFSLSAGRRSIKTEDYPLT APMFLYLPAHRLPRIARDFLTYVRGPAAQIVIRRAGFVDQAPEHIPLRLQGERLSNAIRSAGEDIPLSELQRLISGLDGL QRLTTSFRFEAGSSRPDAQSRNNIDLLARELEAGVYDGKRLVFVGFSDGEGPAEGNRAIAMKRAESVRRAVERAAETANL DRISIETAAYGEALPIACDDSAWGRQANRRVEVWIR
Specific function: Unknown
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55855; Mature: 55724
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: PS51123 OMPA_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYYRAAVCAALCFFSFGQPVLGQDVTLSSPDGAIEVSGDLLGFDGEFYRVETQFGELTV CCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEECCCEEECCCCEEEEEEECCEEEE DGSGVRCEGPGCPSLSDFVAEITFAGSSTMAEVLLPALIEGFSLRNGYQTARMQLDSRQF CCCCEEECCCCCCCHHHHHHHEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCEE EYTLSRDGRVAGRFTFQVSNTDEGFADVLANQADIVMALREIREAEHLLASEAGLGDMSL EEEECCCCEEEEEEEEEECCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC SNRGRVLALDAMVPVVAPSNPVRRISLPQLADIYAGKITNWSELGGADAPISVHLPVAGA CCCCCEEEEECEEEEECCCCCCEECCCCHHHHHHHCCCCCHHHCCCCCCCEEEEECCCCC GLAQAVEDKLLSPAGLELSESIRRHDRGSTLVRTVATDPFAIGIASYAETGQTRMLTLTG HHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEECCCCCEEEHHHHHCCCCEEEEEEEC ACGFSLSAGRRSIKTEDYPLTAPMFLYLPAHRLPRIARDFLTYVRGPAAQIVIRRAGFVD CCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC QAPEHIPLRLQGERLSNAIRSAGEDIPLSELQRLISGLDGLQRLTTSFRFEAGSSRPDAQ CCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCC SRNNIDLLARELEAGVYDGKRLVFVGFSDGEGPAEGNRAIAMKRAESVRRAVERAAETAN CCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCC LDRISIETAAYGEALPIACDDSAWGRQANRRVEVWIR CCEEEEEHHCCCCCCEEEECCCCCCCCCCCEEEEEEC >Mature Secondary Structure SYYRAAVCAALCFFSFGQPVLGQDVTLSSPDGAIEVSGDLLGFDGEFYRVETQFGELTV CHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEECCCEEECCCCEEEEEEECCEEEE DGSGVRCEGPGCPSLSDFVAEITFAGSSTMAEVLLPALIEGFSLRNGYQTARMQLDSRQF CCCCEEECCCCCCCHHHHHHHEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCEE EYTLSRDGRVAGRFTFQVSNTDEGFADVLANQADIVMALREIREAEHLLASEAGLGDMSL EEEECCCCEEEEEEEEEECCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC SNRGRVLALDAMVPVVAPSNPVRRISLPQLADIYAGKITNWSELGGADAPISVHLPVAGA CCCCCEEEEECEEEEECCCCCCEECCCCHHHHHHHCCCCCHHHCCCCCCCEEEEECCCCC GLAQAVEDKLLSPAGLELSESIRRHDRGSTLVRTVATDPFAIGIASYAETGQTRMLTLTG HHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEECCCCCEEEHHHHHCCCCEEEEEEEC ACGFSLSAGRRSIKTEDYPLTAPMFLYLPAHRLPRIARDFLTYVRGPAAQIVIRRAGFVD CCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC QAPEHIPLRLQGERLSNAIRSAGEDIPLSELQRLISGLDGLQRLTTSFRFEAGSSRPDAQ CCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCC SRNNIDLLARELEAGVYDGKRLVFVGFSDGEGPAEGNRAIAMKRAESVRRAVERAAETAN CCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCC LDRISIETAAYGEALPIACDDSAWGRQANRRVEVWIR CCEEEEEHHCCCCCCEEEECCCCCCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA