| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99082724
Identifier: 99082724
GI number: 99082724
Start: 3053537
End: 3054292
Strand: Direct
Name: 99082724
Synonym: TM1040_2884
Alternate gene names: NA
Gene position: 3053537-3054292 (Clockwise)
Preceding gene: 99082718
Following gene: 99082725
Centisome position: 95.4
GC content: 51.59
Gene sequence:
>756_bases GTGACTGGTTGGAAAATATTTTCTCATTCTTTGGGTATGGTACTGCGGAATCTGGGCTGGGCCGTGCAGATTGCCTTGGT CCCGGTTTTGATAGCTGTCGTCTGCATCGCGGCCCTATTGTGGACGCATGTCGGAGAGCTCATCGCTAGTATGGGACGGC AGGGCTATGTTCCCAGCGGTGCTTTCATCACCTCAATCTTGCTTAGCGTCGCCATTTTCATCATGGCGCAGCTTTGGGTG TTTGTGAATTGGCACCGCTTTGTGTTGCTGGAAGAATATCCAACGAGCTGGTTTCCAACTATTCACGGAGACCGCATGCT CGCCTATTTTGGAACAGGTCTTTTGCTCGGTCTCATCATGGCGCTCGCTTGGATTGCAGGGGGTATCTTTTCCTCGGTGG GTTCGGTACTCGGCTCACCCGTGATCAGCCTCTTAATTCTGTTCATTGTCATGGTCGGGGTAGGACTTCTTTTCTTCAGG TTGATGCCAACTCTTCCTGCTGCAGCAATTGGTAACACTCTGAGTTTGCGCGAGTCGTGGGAGGCGACGAAGGGAACTGC AGGAACGGCTGTCGTCCTGTTTATCGTGCTGGTCGGGATTCAGATAGTACTCCAGGCCGTTACAAATTTGTCGATTTACA TCTTTGCGCCTCTTGGCCTCGTGTTCGCACTTGTCTCTGCATTGATCATGACACTGGTCAACGTGTCGATCTTGACCACT GTTTATGGCCACTACGTCCAGGGTCGTTCTATCTGA
Upstream 100 bases:
>100_bases CCGTAGCGCCTTTTGCCGGAGGTTGCAAGGTTTACGGCTTTTCTGAACTGCTCAAGGTGATACTGTGGGAAGTAAGTCTA TTGATACCGAGGATATTTAA
Downstream 100 bases:
>100_bases AACGGCTCCAACATCATGCGTGAAACGCTGCGCCCTCTTGCCTTGGGCGTGGCTTTGGGTCACGAAATCCATATGACCAA CTTCAGAACCCAGGCCAAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 251; Mature: 250
Protein sequence:
>251_residues MTGWKIFSHSLGMVLRNLGWAVQIALVPVLIAVVCIAALLWTHVGELIASMGRQGYVPSGAFITSILLSVAIFIMAQLWV FVNWHRFVLLEEYPTSWFPTIHGDRMLAYFGTGLLLGLIMALAWIAGGIFSSVGSVLGSPVISLLILFIVMVGVGLLFFR LMPTLPAAAIGNTLSLRESWEATKGTAGTAVVLFIVLVGIQIVLQAVTNLSIYIFAPLGLVFALVSALIMTLVNVSILTT VYGHYVQGRSI
Sequences:
>Translated_251_residues MTGWKIFSHSLGMVLRNLGWAVQIALVPVLIAVVCIAALLWTHVGELIASMGRQGYVPSGAFITSILLSVAIFIMAQLWV FVNWHRFVLLEEYPTSWFPTIHGDRMLAYFGTGLLLGLIMALAWIAGGIFSSVGSVLGSPVISLLILFIVMVGVGLLFFR LMPTLPAAAIGNTLSLRESWEATKGTAGTAVVLFIVLVGIQIVLQAVTNLSIYIFAPLGLVFALVSALIMTLVNVSILTT VYGHYVQGRSI >Mature_250_residues TGWKIFSHSLGMVLRNLGWAVQIALVPVLIAVVCIAALLWTHVGELIASMGRQGYVPSGAFITSILLSVAIFIMAQLWVF VNWHRFVLLEEYPTSWFPTIHGDRMLAYFGTGLLLGLIMALAWIAGGIFSSVGSVLGSPVISLLILFIVMVGVGLLFFRL MPTLPAAAIGNTLSLRESWEATKGTAGTAVVLFIVLVGIQIVLQAVTNLSIYIFAPLGLVFALVSALIMTLVNVSILTTV YGHYVQGRSI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27048; Mature: 26917
Theoretical pI: Translated: 9.47; Mature: 9.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGWKIFSHSLGMVLRNLGWAVQIALVPVLIAVVCIAALLWTHVGELIASMGRQGYVPSG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH AFITSILLSVAIFIMAQLWVFVNWHRFVLLEEYPTSWFPTIHGDRMLAYFGTGLLLGLIM HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH ALAWIAGGIFSSVGSVLGSPVISLLILFIVMVGVGLLFFRLMPTLPAAAIGNTLSLRESW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHH EATKGTAGTAVVLFIVLVGIQIVLQAVTNLSIYIFAPLGLVFALVSALIMTLVNVSILTT HHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VYGHYVQGRSI HHHHHHCCCCC >Mature Secondary Structure TGWKIFSHSLGMVLRNLGWAVQIALVPVLIAVVCIAALLWTHVGELIASMGRQGYVPSG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH AFITSILLSVAIFIMAQLWVFVNWHRFVLLEEYPTSWFPTIHGDRMLAYFGTGLLLGLIM HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH ALAWIAGGIFSSVGSVLGSPVISLLILFIVMVGVGLLFFRLMPTLPAAAIGNTLSLRESW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHH EATKGTAGTAVVLFIVLVGIQIVLQAVTNLSIYIFAPLGLVFALVSALIMTLVNVSILTT HHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VYGHYVQGRSI HHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA