| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is ilvA [H]
Identifier: 99082725
GI number: 99082725
Start: 3054365
End: 3055591
Strand: Direct
Name: ilvA [H]
Synonym: TM1040_2885
Alternate gene names: 99082725
Gene position: 3054365-3055591 (Clockwise)
Preceding gene: 99082724
Following gene: 99082727
Centisome position: 95.42
GC content: 58.76
Gene sequence:
>1227_bases ATGACCAACTTCAGAACCCAGGCCAAAGCGGCCGAGGCGGCGATGCGCGATGTCTTCCCGCCCACGCCGCTGCAACGCAA CGAACTCCTGTCGCAGCGCTTTGGTGCGGAGATTTACCTCAAACGCGAGGATCTCAGCCCGGTGCGCTCCTACAAGATTC GCGGCGCGCTCAACGCGATGCGAAAGCAGACCAGCAAGGATCTGTTTGTCTGTGCTTCGGCGGGAAATCACGCGCAGGGC ATGGCTTACATGTGTCGGCAAATGGACAAACGGGGTGTGATCTTTATGCCGGTGACCACACCTCAGCAGAAGATCCAGAA GACCCGCATGTTTGGCGGTGACAACGTCGAGGTGCATCTGATCGGGGATTACTTCGACGATACATTGTCCGCCGCGCAGG CGTGGTGCGCAGAAAAAGGAGGGTATTTCCTCTCTCCTTTTGACGACGCGGATGTCATCGAAGGTCAGGCATCAATCGCA GTGGAAATCGAGGCGCAACTCGGCAAGGCGCCGGATCATATCGTTCTACCGGTGGGCGGCGGGGGTATGTCCTCTGGCGT GGTTCGGTATTTTGGCGAGGATGTGCATGCGCTTCTTGTGGAGCCTGAGGGCGGCGCCTGCCTGAAGGCGGCGCTTGAGG CAGGTCATCCCACACCGCTCAACCGGGTGGATACCTTTGTGGACGGCGCCGCCGTTGGCAAAATTGGCGAGCGGCCTTTT GATATTTTGCGCAGCGTGCCGTTGCCGGATGTCCTGACTGTGTCAGAGGACCGGATCTGCACCACCATCCTCGAGATGCT CAATGTCGAAGGTATCGTTCTGGAACCTGCAGGCGCGCTCGCCGTCGAGGCGCTGGGCGACCTGCGCACATGGATTAAGG GTAAGACCGTGGTTTGTCTGACTTCCGGCGGGAACTTTGATTTCGAGCGACTGCCAGAGGTCAAGGAACGGGCGCAGCGC TATTCCGGGGTGAAGAAATACTTCCTGCTGCGCCTGCCGCAACGTCCCGGCGCGCTCAAGGAATTCCTGAACATTCTTGG GCCGGATGATGACATCGCACGTTTTGAATACATGAAGAAGTCTGCGCGCAACTTCGGCTCGGTCCTGATCGGGATCGAGA CCAAGCGCCCAGAGAACTTCGCGCCGCTGTTTGCGCAACTGGATGCGGCGGGTTTCACCTACACCGACATCACAAATGAC GAGACACTGGCGCAGTTCGTGATCTGA
Upstream 100 bases:
>100_bases CCACTACGTCCAGGGTCGTTCTATCTGAAACGGCTCCAACATCATGCGTGAAACGCTGCGCCCTCTTGCCTTGGGCGTGG CTTTGGGTCACGAAATCCAT
Downstream 100 bases:
>100_bases GAAGATGAAGCAACACGTTGCGCCGCGTCGTCTATGCCAGTTCTCGGACGTTTTGGAGGAAGCTCGTCTTGGAAGCTGTA TAGCTCGACATCACCCGGGT
Product: threonine dehydratase
Products: NA
Alternate protein names: Threonine deaminase [H]
Number of amino acids: Translated: 408; Mature: 407
Protein sequence:
>408_residues MTNFRTQAKAAEAAMRDVFPPTPLQRNELLSQRFGAEIYLKREDLSPVRSYKIRGALNAMRKQTSKDLFVCASAGNHAQG MAYMCRQMDKRGVIFMPVTTPQQKIQKTRMFGGDNVEVHLIGDYFDDTLSAAQAWCAEKGGYFLSPFDDADVIEGQASIA VEIEAQLGKAPDHIVLPVGGGGMSSGVVRYFGEDVHALLVEPEGGACLKAALEAGHPTPLNRVDTFVDGAAVGKIGERPF DILRSVPLPDVLTVSEDRICTTILEMLNVEGIVLEPAGALAVEALGDLRTWIKGKTVVCLTSGGNFDFERLPEVKERAQR YSGVKKYFLLRLPQRPGALKEFLNILGPDDDIARFEYMKKSARNFGSVLIGIETKRPENFAPLFAQLDAAGFTYTDITND ETLAQFVI
Sequences:
>Translated_408_residues MTNFRTQAKAAEAAMRDVFPPTPLQRNELLSQRFGAEIYLKREDLSPVRSYKIRGALNAMRKQTSKDLFVCASAGNHAQG MAYMCRQMDKRGVIFMPVTTPQQKIQKTRMFGGDNVEVHLIGDYFDDTLSAAQAWCAEKGGYFLSPFDDADVIEGQASIA VEIEAQLGKAPDHIVLPVGGGGMSSGVVRYFGEDVHALLVEPEGGACLKAALEAGHPTPLNRVDTFVDGAAVGKIGERPF DILRSVPLPDVLTVSEDRICTTILEMLNVEGIVLEPAGALAVEALGDLRTWIKGKTVVCLTSGGNFDFERLPEVKERAQR YSGVKKYFLLRLPQRPGALKEFLNILGPDDDIARFEYMKKSARNFGSVLIGIETKRPENFAPLFAQLDAAGFTYTDITND ETLAQFVI >Mature_407_residues TNFRTQAKAAEAAMRDVFPPTPLQRNELLSQRFGAEIYLKREDLSPVRSYKIRGALNAMRKQTSKDLFVCASAGNHAQGM AYMCRQMDKRGVIFMPVTTPQQKIQKTRMFGGDNVEVHLIGDYFDDTLSAAQAWCAEKGGYFLSPFDDADVIEGQASIAV EIEAQLGKAPDHIVLPVGGGGMSSGVVRYFGEDVHALLVEPEGGACLKAALEAGHPTPLNRVDTFVDGAAVGKIGERPFD ILRSVPLPDVLTVSEDRICTTILEMLNVEGIVLEPAGALAVEALGDLRTWIKGKTVVCLTSGGNFDFERLPEVKERAQRY SGVKKYFLLRLPQRPGALKEFLNILGPDDDIARFEYMKKSARNFGSVLIGIETKRPENFAPLFAQLDAAGFTYTDITNDE TLAQFVI
Specific function: Catalyzes the formation of alpha-ketobutyrate from threonine in a two-step reaction. The first step is a dehydration of threonine, followed by rehydration and liberation of ammonia [H]
COG id: COG1171
COG function: function code E; Threonine dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the serine/threonine dehydratase family [H]
Homologues:
Organism=Homo sapiens, GI11345492, Length=326, Percent_Identity=28.5276073619632, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI33469958, Length=314, Percent_Identity=29.2993630573248, Blast_Score=93, Evalue=5e-19, Organism=Homo sapiens, GI19923959, Length=271, Percent_Identity=29.520295202952, Blast_Score=74, Evalue=3e-13, Organism=Escherichia coli, GI1790207, Length=389, Percent_Identity=34.1902313624679, Blast_Score=187, Evalue=1e-48, Organism=Escherichia coli, GI1789505, Length=301, Percent_Identity=31.2292358803987, Blast_Score=128, Evalue=6e-31, Organism=Escherichia coli, GI1789235, Length=285, Percent_Identity=22.1052631578947, Blast_Score=66, Evalue=4e-12, Organism=Caenorhabditis elegans, GI71991565, Length=333, Percent_Identity=32.4324324324324, Blast_Score=126, Evalue=2e-29, Organism=Caenorhabditis elegans, GI17508781, Length=256, Percent_Identity=30.46875, Blast_Score=110, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17537387, Length=347, Percent_Identity=28.2420749279539, Blast_Score=100, Evalue=2e-21, Organism=Saccharomyces cerevisiae, GI6320930, Length=412, Percent_Identity=32.7669902912621, Blast_Score=178, Evalue=2e-45, Organism=Saccharomyces cerevisiae, GI6322631, Length=308, Percent_Identity=28.8961038961039, Blast_Score=118, Evalue=2e-27, Organism=Saccharomyces cerevisiae, GI6319788, Length=297, Percent_Identity=24.5791245791246, Blast_Score=74, Evalue=3e-14, Organism=Drosophila melanogaster, GI21355833, Length=323, Percent_Identity=28.4829721362229, Blast_Score=97, Evalue=2e-20,
Paralogues:
None
Copy number: 1344 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001926 - InterPro: IPR000634 - InterPro: IPR001721 - InterPro: IPR011820 [H]
Pfam domain/function: PF00291 PALP; PF00585 Thr_dehydrat_C [H]
EC number: =4.3.1.19 [H]
Molecular weight: Translated: 44774; Mature: 44643
Theoretical pI: Translated: 5.35; Mature: 5.35
Prosite motif: PS00165 DEHYDRATASE_SER_THR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNFRTQAKAAEAAMRDVFPPTPLQRNELLSQRFGAEIYLKREDLSPVRSYKIRGALNAM CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH RKQTSKDLFVCASAGNHAQGMAYMCRQMDKRGVIFMPVTTPQQKIQKTRMFGGDNVEVHL HHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEE IGDYFDDTLSAAQAWCAEKGGYFLSPFDDADVIEGQASIAVEIEAQLGKAPDHIVLPVGG ECCHHHHHHHHHHHHHHHCCCEEECCCCCCHHCCCCCEEEEEEECCCCCCCCEEEEEECC GGMSSGVVRYFGEDVHALLVEPEGGACLKAALEAGHPTPLNRVDTFVDGAAVGKIGERPF CCCHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHCCHHHCCCCCCHH DILRSVPLPDVLTVSEDRICTTILEMLNVEGIVLEPAGALAVEALGDLRTWIKGKTVVCL HHHHCCCCCCEEECCCCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHCCCEEEEE TSGGNFDFERLPEVKERAQRYSGVKKYFLLRLPQRPGALKEFLNILGPDDDIARFEYMKK ECCCCCCHHHCHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHH SARNFGSVLIGIETKRPENFAPLFAQLDAAGFTYTDITNDETLAQFVI HHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCC >Mature Secondary Structure TNFRTQAKAAEAAMRDVFPPTPLQRNELLSQRFGAEIYLKREDLSPVRSYKIRGALNAM CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH RKQTSKDLFVCASAGNHAQGMAYMCRQMDKRGVIFMPVTTPQQKIQKTRMFGGDNVEVHL HHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEE IGDYFDDTLSAAQAWCAEKGGYFLSPFDDADVIEGQASIAVEIEAQLGKAPDHIVLPVGG ECCHHHHHHHHHHHHHHHCCCEEECCCCCCHHCCCCCEEEEEEECCCCCCCCEEEEEECC GGMSSGVVRYFGEDVHALLVEPEGGACLKAALEAGHPTPLNRVDTFVDGAAVGKIGERPF CCCHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHCCHHHCCCCCCHH DILRSVPLPDVLTVSEDRICTTILEMLNVEGIVLEPAGALAVEALGDLRTWIKGKTVVCL HHHHCCCCCCEEECCCCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHCCCEEEEE TSGGNFDFERLPEVKERAQRYSGVKKYFLLRLPQRPGALKEFLNILGPDDDIARFEYMKK ECCCCCCHHHCHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHH SARNFGSVLIGIETKRPENFAPLFAQLDAAGFTYTDITNDETLAQFVI HHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]