| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is gpmI
Identifier: 99082597
GI number: 99082597
Start: 2905615
End: 2907135
Strand: Reverse
Name: gpmI
Synonym: TM1040_2757
Alternate gene names: 99082597
Gene position: 2907135-2905615 (Counterclockwise)
Preceding gene: 99082599
Following gene: 99082596
Centisome position: 90.82
GC content: 61.14
Gene sequence:
>1521_bases ATGACCACACCCAAACCCGTTGTACTTTGCATCCTTGATGGCTGGGGCAGCGCCGAACCGGGGCCTGCGAATGCGCCCTA TCTTGCAAAGACACCGACGCTGGATGCGATCATGCAGAGCTGCCCGACCGCGCGGCTTGTGACGCATGGTCCAGATGTCG GCCTGCCAAGCGGGCAAATGGGGAACTCCGAAGTCGGCCACACCAATATCGGCGCGGGTCGCGTGGTCGCGATGGATCTG GGTCAGATCGACCTCGCGATCGAAGATGGGTCTTTCTACGATAACGACGCGCTTCAGGCGTTCATCGCCAAGCTGAAAGA GACAGGTGGTGCTGCGCATCTGATGGGGCTGGTCTCGGATGGTGGCGTGCATGGCCATGTGACGCATATCCTGGCTGCGA TCAAAGCGATCCGCGATGCGGGCGTCCCGGTCTGGCTGCACGCGATCACCGATGGGCGTGACGTGGCCCCGAAATCTGCG CTCACCTATCTCGATCAACTGGAGGCCGGGATGGCGCCGGGCGCGCAGATTGCCACCGTCACCGGACGTTATTTCGCCAT GGACCGCGATAATCGCTGGGAGCGGGTCTCTGAGGCCTATGACGCGATGGTAAAGGGCGCCGGTCAGTTCACCGCCGCCA CCGCGAGGGACGCCGTCGAAAATGCCTATGGCCGCGATGAGCTTGATGAGTTTGTCAAGGCAACGGTGGTCGAGGGGTTT GATGGTATCAAGGAAGGAGACGGTTTCTTCTGCCTGAACTTCCGCGCGGATCGCGCGCGGGAAATTCTGCGCGCTATTGG TGAGCCAGGGTTTGCCGAGTTCGACACCGGTCCGCGTCCTGCACTGGCGGCGCTCTTGGGAATGGTGGAGTATTCTGAGG GTCATAATGCCTATATGACCACTGCCTACCCCAAGCGCGCCATCGTCAACACGCTCGGCGAATGGGTGGCCAAACAGGGC AAGCGCCAGTTCCGTCTCGCCGAGACCGAAAAGTACCCGCATGTGACCTTCTTCCTCAATGGTGGCAAGGAAACCCCCGA GGTAGGCGAAGATCGCTTTATGCCCAAATCGCCCAAGGTGGCGACTTATGATCTGCAACCCGAGATGTCTGCGCCAGAAG TCACCGCGAAATTCGTCGAAGCCATCCGGGCTGGCTATGACCTCATCGTGACCAACTACGCCAATCCCGACATGGTCGGC CATACCGGTGATCTCGATGCAGCCATCAAGGCCTGCGAGGCGGTGGATCAGGGGCTTGGCGAGGTTGTCGCGGCCCTGAA AGATGCAGGCGGGGCGATGATCGTGACCGCCGACCACGGCAACTGCGAGCTGATGGTTGATCCCGAAACCGGAGGGGCAC ATACGGCCCATACCACCAATCTCGTGCCGGTGGCGCTTGTTGGTGGGCCAGAGGGGACAGCGCTGAAGGATGGGCGGCTT GCGGATCTCGCGCCGACGCTTCTGGCACTGATGGGGCTCGATCAACCCGAAGAGATGACCGGAGAGAGCCTGCTCGTATG A
Upstream 100 bases:
>100_bases GGCGCACAATGCTGCGGATTGCGCACTCCCCGGTTTCCCAATCGTGCGACAGGTTGTAGAACCCGACACGAAACCCGCAC CCGCCAACCGGAGACGCGCC
Downstream 100 bases:
>100_bases CGTCGTTGCGTGCGATGATGCTGGCACTGGGGCTTTGCATGGCTCTGCCCGTCCCTGCTGTCGCTCAGGATCCGGGCGAT GCGGCCCTCGAGGCGGCGGT
Product: phosphoglyceromutase
Products: NA
Alternate protein names: BPG-independent PGAM; Phosphoglyceromutase; iPGM
Number of amino acids: Translated: 506; Mature: 505
Protein sequence:
>506_residues MTTPKPVVLCILDGWGSAEPGPANAPYLAKTPTLDAIMQSCPTARLVTHGPDVGLPSGQMGNSEVGHTNIGAGRVVAMDL GQIDLAIEDGSFYDNDALQAFIAKLKETGGAAHLMGLVSDGGVHGHVTHILAAIKAIRDAGVPVWLHAITDGRDVAPKSA LTYLDQLEAGMAPGAQIATVTGRYFAMDRDNRWERVSEAYDAMVKGAGQFTAATARDAVENAYGRDELDEFVKATVVEGF DGIKEGDGFFCLNFRADRAREILRAIGEPGFAEFDTGPRPALAALLGMVEYSEGHNAYMTTAYPKRAIVNTLGEWVAKQG KRQFRLAETEKYPHVTFFLNGGKETPEVGEDRFMPKSPKVATYDLQPEMSAPEVTAKFVEAIRAGYDLIVTNYANPDMVG HTGDLDAAIKACEAVDQGLGEVVAALKDAGGAMIVTADHGNCELMVDPETGGAHTAHTTNLVPVALVGGPEGTALKDGRL ADLAPTLLALMGLDQPEEMTGESLLV
Sequences:
>Translated_506_residues MTTPKPVVLCILDGWGSAEPGPANAPYLAKTPTLDAIMQSCPTARLVTHGPDVGLPSGQMGNSEVGHTNIGAGRVVAMDL GQIDLAIEDGSFYDNDALQAFIAKLKETGGAAHLMGLVSDGGVHGHVTHILAAIKAIRDAGVPVWLHAITDGRDVAPKSA LTYLDQLEAGMAPGAQIATVTGRYFAMDRDNRWERVSEAYDAMVKGAGQFTAATARDAVENAYGRDELDEFVKATVVEGF DGIKEGDGFFCLNFRADRAREILRAIGEPGFAEFDTGPRPALAALLGMVEYSEGHNAYMTTAYPKRAIVNTLGEWVAKQG KRQFRLAETEKYPHVTFFLNGGKETPEVGEDRFMPKSPKVATYDLQPEMSAPEVTAKFVEAIRAGYDLIVTNYANPDMVG HTGDLDAAIKACEAVDQGLGEVVAALKDAGGAMIVTADHGNCELMVDPETGGAHTAHTTNLVPVALVGGPEGTALKDGRL ADLAPTLLALMGLDQPEEMTGESLLV >Mature_505_residues TTPKPVVLCILDGWGSAEPGPANAPYLAKTPTLDAIMQSCPTARLVTHGPDVGLPSGQMGNSEVGHTNIGAGRVVAMDLG QIDLAIEDGSFYDNDALQAFIAKLKETGGAAHLMGLVSDGGVHGHVTHILAAIKAIRDAGVPVWLHAITDGRDVAPKSAL TYLDQLEAGMAPGAQIATVTGRYFAMDRDNRWERVSEAYDAMVKGAGQFTAATARDAVENAYGRDELDEFVKATVVEGFD GIKEGDGFFCLNFRADRAREILRAIGEPGFAEFDTGPRPALAALLGMVEYSEGHNAYMTTAYPKRAIVNTLGEWVAKQGK RQFRLAETEKYPHVTFFLNGGKETPEVGEDRFMPKSPKVATYDLQPEMSAPEVTAKFVEAIRAGYDLIVTNYANPDMVGH TGDLDAAIKACEAVDQGLGEVVAALKDAGGAMIVTADHGNCELMVDPETGGAHTAHTTNLVPVALVGGPEGTALKDGRLA DLAPTLLALMGLDQPEEMTGESLLV
Specific function: Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
COG id: COG0696
COG function: function code G; Phosphoglyceromutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the BPG-independent phosphoglycerate mutase family
Homologues:
Organism=Escherichia coli, GI1790041, Length=516, Percent_Identity=48.4496124031008, Blast_Score=479, Evalue=1e-136, Organism=Caenorhabditis elegans, GI32564249, Length=513, Percent_Identity=45.6140350877193, Blast_Score=411, Evalue=1e-115, Organism=Caenorhabditis elegans, GI17507741, Length=518, Percent_Identity=45.1737451737452, Blast_Score=411, Evalue=1e-115,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): GPMI_SILST (Q1GCX7)
Other databases:
- EMBL: CP000377 - RefSeq: YP_614751.1 - ProteinModelPortal: Q1GCX7 - SMR: Q1GCX7 - STRING: Q1GCX7 - GeneID: 4077629 - GenomeReviews: CP000377_GR - KEGG: sit:TM1040_2757 - NMPDR: fig|292414.1.peg.1664 - eggNOG: COG0696 - HOGENOM: HBG613255 - OMA: DHGNAEL - PhylomeDB: Q1GCX7 - ProtClustDB: PRK05434 - BioCyc: SSP292414:TM1040_2757-MONOMER - GO: GO:0005737 - GO: GO:0006096 - HAMAP: MF_01038 - InterPro: IPR017849 - InterPro: IPR017850 - InterPro: IPR011258 - InterPro: IPR006124 - InterPro: IPR005995 - Gene3D: G3DSA:3.40.720.10 - Gene3D: G3DSA:3.40.1450.10 - PIRSF: PIRSF001492 - TIGRFAMs: TIGR01307
Pfam domain/function: PF06415 iPGM_N; PF01676 Metalloenzyme; SSF53649 Alkaline_phosphatase_core; SSF64158 BPG-indep_PGM_N
EC number: =5.4.2.1
Molecular weight: Translated: 53564; Mature: 53433
Theoretical pI: Translated: 4.53; Mature: 4.53
Prosite motif: NA
Important sites: ACT_SITE 63-63
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPKPVVLCILDGWGSAEPGPANAPYLAKTPTLDAIMQSCPTARLVTHGPDVGLPSGQM CCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCHHHHHHHCCCCEEEECCCCCCCCCCCC GNSEVGHTNIGAGRVVAMDLGQIDLAIEDGSFYDNDALQAFIAKLKETGGAAHLMGLVSD CCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC GGVHGHVTHILAAIKAIRDAGVPVWLHAITDGRDVAPKSALTYLDQLEAGMAPGAQIATV CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEE TGRYFAMDRDNRWERVSEAYDAMVKGAGQFTAATARDAVENAYGRDELDEFVKATVVEGF ECEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC DGIKEGDGFFCLNFRADRAREILRAIGEPGFAEFDTGPRPALAALLGMVEYSEGHNAYMT CCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE TAYPKRAIVNTLGEWVAKQGKRQFRLAETEKYPHVTFFLNGGKETPEVGEDRFMPKSPKV CCCCHHHHHHHHHHHHHHCCCHHEEEHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCE ATYDLQPEMSAPEVTAKFVEAIRAGYDLIVTNYANPDMVGHTGDLDAAIKACEAVDQGLG EEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH EVVAALKDAGGAMIVTADHGNCELMVDPETGGAHTAHTTNLVPVALVGGPEGTALKDGRL HHHHHHHCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCH ADLAPTLLALMGLDQPEEMTGESLLV HHHHHHHHHHHCCCCCHHHCCCCCCC >Mature Secondary Structure TTPKPVVLCILDGWGSAEPGPANAPYLAKTPTLDAIMQSCPTARLVTHGPDVGLPSGQM CCCCCEEEEEEECCCCCCCCCCCCCCEECCCCHHHHHHHCCCCEEEECCCCCCCCCCCC GNSEVGHTNIGAGRVVAMDLGQIDLAIEDGSFYDNDALQAFIAKLKETGGAAHLMGLVSD CCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC GGVHGHVTHILAAIKAIRDAGVPVWLHAITDGRDVAPKSALTYLDQLEAGMAPGAQIATV CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEE TGRYFAMDRDNRWERVSEAYDAMVKGAGQFTAATARDAVENAYGRDELDEFVKATVVEGF ECEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC DGIKEGDGFFCLNFRADRAREILRAIGEPGFAEFDTGPRPALAALLGMVEYSEGHNAYMT CCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE TAYPKRAIVNTLGEWVAKQGKRQFRLAETEKYPHVTFFLNGGKETPEVGEDRFMPKSPKV CCCCHHHHHHHHHHHHHHCCCHHEEEHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCE ATYDLQPEMSAPEVTAKFVEAIRAGYDLIVTNYANPDMVGHTGDLDAAIKACEAVDQGLG EEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH EVVAALKDAGGAMIVTADHGNCELMVDPETGGAHTAHTTNLVPVALVGGPEGTALKDGRL HHHHHHHCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCH ADLAPTLLALMGLDQPEEMTGESLLV HHHHHHHHHHHCCCCCHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA