Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082596

Identifier: 99082596

GI number: 99082596

Start: 2904473

End: 2905576

Strand: Reverse

Name: 99082596

Synonym: TM1040_2756

Alternate gene names: NA

Gene position: 2905576-2904473 (Counterclockwise)

Preceding gene: 99082597

Following gene: 99082595

Centisome position: 90.77

GC content: 63.77

Gene sequence:

>1104_bases
ATGGCTCTGCCCGTCCCTGCTGTCGCTCAGGATCCGGGCGATGCGGCCCTCGAGGCGGCGGTGGCGCTCGAAGAGGCGTC
CGAACGCCTTGATGCTGCCAAGAGCGCGAATGATCGGGTGAAGGCGCTCACGGAAACCGTTCGCGCTTATGAGGCCGGGC
TTCAGGCCATGCGCGAGGGGCTGCGCCGGGTGGCGCGGCGCGAAACCCAGCTCACCACGCAATTGAAGGCCCGAGAGGAT
GAGGTGGCCGATCTTCTTGGCGTGATCACCACGATCGAGACGTCGACTCCACCGGTGCTGATGCTGCACCCATCCGGTCC
ATTGGGGGCGGCCCGTTCTGCCATGATGCTGGCAGAGGTGACACCGGGCCTGCAAGCGCGTGCCGATGCGCTGCGAAATG
ACCTCCAGGAGGTGCGCGATCTGCGGCATTTGCAGCAAAGCGCAGCCCTGCAACTTGAGAAGGGGCTGCAAGGGGTGCAG
GCCGCGCGGGCGGCGCTCTCGACCGCTATTGCTGATCGGCAGGATTTGCCCAAACGCTTTATCGAGGATCCGGTGCAGAC
TGCTATCCTGATTTCCTCGACCGAGACGCTCACCGGATTTGCCGATGGGCTGACGCTCATTGCCGAAGCCAGTGGAGTCG
AACCGAATGGCGCTGATATTTCCGACTTGAGGGGCGATCTGCCTCTTCCGGTCGAGGGGTTGCTGTTGCGCGGATACGGA
GAGCAGGACGCCGCCGGGGTCGCCCGCGCGGGCATCCTTGTGGCAACGCGTCCACGCGCTCTTGTTAGCACGCCCACGGC
GGCGACGATCCGCTACCTTGGCCCGCTTCTGGATCTCGGCAATGTGGTGATTCTGGAGCCGCAGCCGGACACGCTCTTTA
TCCTGTCGGGGCTTGCCGAAGTCTTTGGCGAGGCAGGACAGGTGATCCCGGAAGGCACGCCCGTCGGGCTGATGGGCGGC
GAGGTGGCAGCGAGCAGCGCGATTTTGTCACTTAGCGGTGAAGGGGGTGGAACTGGTCGCTCGGAAACGCTCTATATAGA
AGTCAGAATGGAAAACAGTCCCGTGGACCCTGAAACGTGGTTCCGGACAGGGCAAGGTGGATAG

Upstream 100 bases:

>100_bases
TTCTGGCACTGATGGGGCTCGATCAACCCGAAGAGATGACCGGAGAGAGCCTGCTCGTATGACGTCGTTGCGTGCGATGA
TGCTGGCACTGGGGCTTTGC

Downstream 100 bases:

>100_bases
GCAAGAGATGAAGAAATTTGCGATGGCGGCTCTGGGCGGGACGCTTGCGGGCTTTGTGGCAACAACCTACGTGGCAGCGC
CGTTGCTGGCACAGGAGAGC

Product: peptidase M23B

Products: NA

Alternate protein names: Peptidase M; Filament-A Percursor; M23 Peptidase Domain Protein; M23 Peptidase Domain-Containing Protein; Filament-A; Metalloendopeptidase Protein; M23 Family Peptidase; M23 Family Peptidoglycan-Specific Endopeptidase; M23 Family Non-Proteolytic Peptidase

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MALPVPAVAQDPGDAALEAAVALEEASERLDAAKSANDRVKALTETVRAYEAGLQAMREGLRRVARRETQLTTQLKARED
EVADLLGVITTIETSTPPVLMLHPSGPLGAARSAMMLAEVTPGLQARADALRNDLQEVRDLRHLQQSAALQLEKGLQGVQ
AARAALSTAIADRQDLPKRFIEDPVQTAILISSTETLTGFADGLTLIAEASGVEPNGADISDLRGDLPLPVEGLLLRGYG
EQDAAGVARAGILVATRPRALVSTPTAATIRYLGPLLDLGNVVILEPQPDTLFILSGLAEVFGEAGQVIPEGTPVGLMGG
EVAASSAILSLSGEGGGTGRSETLYIEVRMENSPVDPETWFRTGQGG

Sequences:

>Translated_367_residues
MALPVPAVAQDPGDAALEAAVALEEASERLDAAKSANDRVKALTETVRAYEAGLQAMREGLRRVARRETQLTTQLKARED
EVADLLGVITTIETSTPPVLMLHPSGPLGAARSAMMLAEVTPGLQARADALRNDLQEVRDLRHLQQSAALQLEKGLQGVQ
AARAALSTAIADRQDLPKRFIEDPVQTAILISSTETLTGFADGLTLIAEASGVEPNGADISDLRGDLPLPVEGLLLRGYG
EQDAAGVARAGILVATRPRALVSTPTAATIRYLGPLLDLGNVVILEPQPDTLFILSGLAEVFGEAGQVIPEGTPVGLMGG
EVAASSAILSLSGEGGGTGRSETLYIEVRMENSPVDPETWFRTGQGG
>Mature_366_residues
ALPVPAVAQDPGDAALEAAVALEEASERLDAAKSANDRVKALTETVRAYEAGLQAMREGLRRVARRETQLTTQLKAREDE
VADLLGVITTIETSTPPVLMLHPSGPLGAARSAMMLAEVTPGLQARADALRNDLQEVRDLRHLQQSAALQLEKGLQGVQA
ARAALSTAIADRQDLPKRFIEDPVQTAILISSTETLTGFADGLTLIAEASGVEPNGADISDLRGDLPLPVEGLLLRGYGE
QDAAGVARAGILVATRPRALVSTPTAATIRYLGPLLDLGNVVILEPQPDTLFILSGLAEVFGEAGQVIPEGTPVGLMGGE
VAASSAILSLSGEGGGTGRSETLYIEVRMENSPVDPETWFRTGQGG

Specific function: Unknown

COG id: COG4942

COG function: function code D; Membrane-bound metallopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38401; Mature: 38270

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALPVPAVAQDPGDAALEAAVALEEASERLDAAKSANDRVKALTETVRAYEAGLQAMREG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
LRRVARRETQLTTQLKAREDEVADLLGVITTIETSTPPVLMLHPSGPLGAARSAMMLAEV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHC
TPGLQARADALRNDLQEVRDLRHLQQSAALQLEKGLQGVQAARAALSTAIADRQDLPKRF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEDPVQTAILISSTETLTGFADGLTLIAEASGVEPNGADISDLRGDLPLPVEGLLLRGYG
HCCHHHHEEEEECCHHHHHHHHHHHEEECCCCCCCCCCCHHHHCCCCCCCCCCEEEECCC
EQDAAGVARAGILVATRPRALVSTPTAATIRYLGPLLDLGNVVILEPQPDTLFILSGLAE
CCHHHHHHHCCEEEEECCCHHCCCCCHHHHHHHHHHHCCCCEEEECCCCCEEHHHHHHHH
VFGEAGQVIPEGTPVGLMGGEVAASSAILSLSGEGGGTGRSETLYIEVRMENSPVDPETW
HHHCCCCCCCCCCCCCCCCCHHHHCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCHHHH
FRTGQGG
CCCCCCC
>Mature Secondary Structure 
ALPVPAVAQDPGDAALEAAVALEEASERLDAAKSANDRVKALTETVRAYEAGLQAMREG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
LRRVARRETQLTTQLKAREDEVADLLGVITTIETSTPPVLMLHPSGPLGAARSAMMLAEV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHC
TPGLQARADALRNDLQEVRDLRHLQQSAALQLEKGLQGVQAARAALSTAIADRQDLPKRF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEDPVQTAILISSTETLTGFADGLTLIAEASGVEPNGADISDLRGDLPLPVEGLLLRGYG
HCCHHHHEEEEECCHHHHHHHHHHHEEECCCCCCCCCCCHHHHCCCCCCCCCCEEEECCC
EQDAAGVARAGILVATRPRALVSTPTAATIRYLGPLLDLGNVVILEPQPDTLFILSGLAE
CCHHHHHHHCCEEEEECCCHHCCCCCHHHHHHHHHHHCCCCEEEECCCCCEEHHHHHHHH
VFGEAGQVIPEGTPVGLMGGEVAASSAILSLSGEGGGTGRSETLYIEVRMENSPVDPETW
HHHCCCCCCCCCCCCCCCCCHHHHCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCHHHH
FRTGQGG
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA