| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082596
Identifier: 99082596
GI number: 99082596
Start: 2904473
End: 2905576
Strand: Reverse
Name: 99082596
Synonym: TM1040_2756
Alternate gene names: NA
Gene position: 2905576-2904473 (Counterclockwise)
Preceding gene: 99082597
Following gene: 99082595
Centisome position: 90.77
GC content: 63.77
Gene sequence:
>1104_bases ATGGCTCTGCCCGTCCCTGCTGTCGCTCAGGATCCGGGCGATGCGGCCCTCGAGGCGGCGGTGGCGCTCGAAGAGGCGTC CGAACGCCTTGATGCTGCCAAGAGCGCGAATGATCGGGTGAAGGCGCTCACGGAAACCGTTCGCGCTTATGAGGCCGGGC TTCAGGCCATGCGCGAGGGGCTGCGCCGGGTGGCGCGGCGCGAAACCCAGCTCACCACGCAATTGAAGGCCCGAGAGGAT GAGGTGGCCGATCTTCTTGGCGTGATCACCACGATCGAGACGTCGACTCCACCGGTGCTGATGCTGCACCCATCCGGTCC ATTGGGGGCGGCCCGTTCTGCCATGATGCTGGCAGAGGTGACACCGGGCCTGCAAGCGCGTGCCGATGCGCTGCGAAATG ACCTCCAGGAGGTGCGCGATCTGCGGCATTTGCAGCAAAGCGCAGCCCTGCAACTTGAGAAGGGGCTGCAAGGGGTGCAG GCCGCGCGGGCGGCGCTCTCGACCGCTATTGCTGATCGGCAGGATTTGCCCAAACGCTTTATCGAGGATCCGGTGCAGAC TGCTATCCTGATTTCCTCGACCGAGACGCTCACCGGATTTGCCGATGGGCTGACGCTCATTGCCGAAGCCAGTGGAGTCG AACCGAATGGCGCTGATATTTCCGACTTGAGGGGCGATCTGCCTCTTCCGGTCGAGGGGTTGCTGTTGCGCGGATACGGA GAGCAGGACGCCGCCGGGGTCGCCCGCGCGGGCATCCTTGTGGCAACGCGTCCACGCGCTCTTGTTAGCACGCCCACGGC GGCGACGATCCGCTACCTTGGCCCGCTTCTGGATCTCGGCAATGTGGTGATTCTGGAGCCGCAGCCGGACACGCTCTTTA TCCTGTCGGGGCTTGCCGAAGTCTTTGGCGAGGCAGGACAGGTGATCCCGGAAGGCACGCCCGTCGGGCTGATGGGCGGC GAGGTGGCAGCGAGCAGCGCGATTTTGTCACTTAGCGGTGAAGGGGGTGGAACTGGTCGCTCGGAAACGCTCTATATAGA AGTCAGAATGGAAAACAGTCCCGTGGACCCTGAAACGTGGTTCCGGACAGGGCAAGGTGGATAG
Upstream 100 bases:
>100_bases TTCTGGCACTGATGGGGCTCGATCAACCCGAAGAGATGACCGGAGAGAGCCTGCTCGTATGACGTCGTTGCGTGCGATGA TGCTGGCACTGGGGCTTTGC
Downstream 100 bases:
>100_bases GCAAGAGATGAAGAAATTTGCGATGGCGGCTCTGGGCGGGACGCTTGCGGGCTTTGTGGCAACAACCTACGTGGCAGCGC CGTTGCTGGCACAGGAGAGC
Product: peptidase M23B
Products: NA
Alternate protein names: Peptidase M; Filament-A Percursor; M23 Peptidase Domain Protein; M23 Peptidase Domain-Containing Protein; Filament-A; Metalloendopeptidase Protein; M23 Family Peptidase; M23 Family Peptidoglycan-Specific Endopeptidase; M23 Family Non-Proteolytic Peptidase
Number of amino acids: Translated: 367; Mature: 366
Protein sequence:
>367_residues MALPVPAVAQDPGDAALEAAVALEEASERLDAAKSANDRVKALTETVRAYEAGLQAMREGLRRVARRETQLTTQLKARED EVADLLGVITTIETSTPPVLMLHPSGPLGAARSAMMLAEVTPGLQARADALRNDLQEVRDLRHLQQSAALQLEKGLQGVQ AARAALSTAIADRQDLPKRFIEDPVQTAILISSTETLTGFADGLTLIAEASGVEPNGADISDLRGDLPLPVEGLLLRGYG EQDAAGVARAGILVATRPRALVSTPTAATIRYLGPLLDLGNVVILEPQPDTLFILSGLAEVFGEAGQVIPEGTPVGLMGG EVAASSAILSLSGEGGGTGRSETLYIEVRMENSPVDPETWFRTGQGG
Sequences:
>Translated_367_residues MALPVPAVAQDPGDAALEAAVALEEASERLDAAKSANDRVKALTETVRAYEAGLQAMREGLRRVARRETQLTTQLKARED EVADLLGVITTIETSTPPVLMLHPSGPLGAARSAMMLAEVTPGLQARADALRNDLQEVRDLRHLQQSAALQLEKGLQGVQ AARAALSTAIADRQDLPKRFIEDPVQTAILISSTETLTGFADGLTLIAEASGVEPNGADISDLRGDLPLPVEGLLLRGYG EQDAAGVARAGILVATRPRALVSTPTAATIRYLGPLLDLGNVVILEPQPDTLFILSGLAEVFGEAGQVIPEGTPVGLMGG EVAASSAILSLSGEGGGTGRSETLYIEVRMENSPVDPETWFRTGQGG >Mature_366_residues ALPVPAVAQDPGDAALEAAVALEEASERLDAAKSANDRVKALTETVRAYEAGLQAMREGLRRVARRETQLTTQLKAREDE VADLLGVITTIETSTPPVLMLHPSGPLGAARSAMMLAEVTPGLQARADALRNDLQEVRDLRHLQQSAALQLEKGLQGVQA ARAALSTAIADRQDLPKRFIEDPVQTAILISSTETLTGFADGLTLIAEASGVEPNGADISDLRGDLPLPVEGLLLRGYGE QDAAGVARAGILVATRPRALVSTPTAATIRYLGPLLDLGNVVILEPQPDTLFILSGLAEVFGEAGQVIPEGTPVGLMGGE VAASSAILSLSGEGGGTGRSETLYIEVRMENSPVDPETWFRTGQGG
Specific function: Unknown
COG id: COG4942
COG function: function code D; Membrane-bound metallopeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38401; Mature: 38270
Theoretical pI: Translated: 4.32; Mature: 4.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALPVPAVAQDPGDAALEAAVALEEASERLDAAKSANDRVKALTETVRAYEAGLQAMREG CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH LRRVARRETQLTTQLKAREDEVADLLGVITTIETSTPPVLMLHPSGPLGAARSAMMLAEV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHC TPGLQARADALRNDLQEVRDLRHLQQSAALQLEKGLQGVQAARAALSTAIADRQDLPKRF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IEDPVQTAILISSTETLTGFADGLTLIAEASGVEPNGADISDLRGDLPLPVEGLLLRGYG HCCHHHHEEEEECCHHHHHHHHHHHEEECCCCCCCCCCCHHHHCCCCCCCCCCEEEECCC EQDAAGVARAGILVATRPRALVSTPTAATIRYLGPLLDLGNVVILEPQPDTLFILSGLAE CCHHHHHHHCCEEEEECCCHHCCCCCHHHHHHHHHHHCCCCEEEECCCCCEEHHHHHHHH VFGEAGQVIPEGTPVGLMGGEVAASSAILSLSGEGGGTGRSETLYIEVRMENSPVDPETW HHHCCCCCCCCCCCCCCCCCHHHHCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCHHHH FRTGQGG CCCCCCC >Mature Secondary Structure ALPVPAVAQDPGDAALEAAVALEEASERLDAAKSANDRVKALTETVRAYEAGLQAMREG CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH LRRVARRETQLTTQLKAREDEVADLLGVITTIETSTPPVLMLHPSGPLGAARSAMMLAEV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHC TPGLQARADALRNDLQEVRDLRHLQQSAALQLEKGLQGVQAARAALSTAIADRQDLPKRF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IEDPVQTAILISSTETLTGFADGLTLIAEASGVEPNGADISDLRGDLPLPVEGLLLRGYG HCCHHHHEEEEECCHHHHHHHHHHHEEECCCCCCCCCCCHHHHCCCCCCCCCCEEEECCC EQDAAGVARAGILVATRPRALVSTPTAATIRYLGPLLDLGNVVILEPQPDTLFILSGLAE CCHHHHHHHCCEEEEECCCHHCCCCCHHHHHHHHHHHCCCCEEEECCCCCEEHHHHHHHH VFGEAGQVIPEGTPVGLMGGEVAASSAILSLSGEGGGTGRSETLYIEVRMENSPVDPETW HHHCCCCCCCCCCCCCCCCCHHHHCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCHHHH FRTGQGG CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA