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The map label for this gene is dppB [H]

Identifier: 99082584

GI number: 99082584

Start: 2888775

End: 2889809

Strand: Reverse

Name: dppB [H]

Synonym: TM1040_2744

Alternate gene names: 99082584

Gene position: 2889809-2888775 (Counterclockwise)

Preceding gene: 99082585

Following gene: 99082583

Centisome position: 90.28

GC content: 60.97

Gene sequence:

>1035_bases
ATGAGTGGTCCCGCTTTTGGCGCCCCACACTCCCCTCCCGACAGATGGTTTGACCTGATGCGTTTTCTTTTGAAGCGGCT
CGGCTTTTATGCCGTTGCCTTTCTGGTGGCCGCGACCTTCAACTTCATGATCCCGCGCCTGTTGCCCGGCAACCCGGCGG
ATATCATGCTGGCGAACTCCGGTGGCATGATCGCACCCGAAGCGCGCGAGGCGCTGATGGCCACCTTCGGGTTCATCGAT
GCACCGTTGCACGAACAGTATTTTGCCTATCTTGGCTCGATCTTCACCTGGGACTTTGGGTTGTCGATCAAGTTCTACCC
GATGCCGGTTGCCGATGTGCTGACGCAGGCGTTGCCGTGGACCCTGTTCCTGACGGGGGCGGCGTTGTTGATTTCCTTTT
CCGTAGGCACCCTTCTGGGCGTGCTGGCAGCCTGGCGGCGCGGGCAGCTTACGGATGTGATCGCCTCACCCACCGCGCTT
GCGCTGCAGTCGGTTCCGGCCGTGGTCGTCGCGCTCTGCGGGCTTTATTTCCTTGCGGTGCGCAACCGCTTCTTCCCGAC
CTCCTACGCCTTTGATCCCAAGCTCGACCCAAGTTGGAGCTGGGAGTTCATCTCATCCGTGGCATATCACGGTTTTTTGC
CGGTGGTGACGCTGAGCGTGGTGCTGATCGGCGGCTACCTCATCACCATGCGCAACAACATGATCGGGCAACTGGGCGAG
GACTACCTCGCCATGGCCGAAGCCAAGGGGCTGAGCGATGCGCGCGTGCGCTATGCCTATGCCGCTCGCAACGCACTGCT
GCCATCCGTCACCGCGCTGGCGCTTAGTTTCGGGGCACTCTTTGGTGGCTCGCTCATTACCGAGGTGGTGTTCAACTATC
CGGGTGTCGGCAACCTTTTGTACCTCGGCATCGTGGGGCGGGATTTCCCGCTGATCCAGGGCCAGCTTCTCATCATGACA
CTTGCCATGCTGCTCGCGAACCTCGCGGTGGACCTGGCCTACGTCTTCCTTGACCCCCGACTGAAGAGGGCCTGA

Upstream 100 bases:

>100_bases
AACCCGGTGGTTCACAAAACCAACCCGGCCCGTCTGATCCACCTCCTGAACCTGCGCCCGGTCGAGTAATTCCTCCCCGA
CCTTCGGGACCGCTCATCTG

Downstream 100 bases:

>100_bases
TGTCAGATCTCCTTCGTACCTTTCTGCGCAATCGCAAGGCCGCTATCGGGCTCACCATCGTGCTGATCTATGTGGCGATT
GCGATTGCCGCGCCCCTGAT

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 343

Protein sequence:

>344_residues
MSGPAFGAPHSPPDRWFDLMRFLLKRLGFYAVAFLVAATFNFMIPRLLPGNPADIMLANSGGMIAPEAREALMATFGFID
APLHEQYFAYLGSIFTWDFGLSIKFYPMPVADVLTQALPWTLFLTGAALLISFSVGTLLGVLAAWRRGQLTDVIASPTAL
ALQSVPAVVVALCGLYFLAVRNRFFPTSYAFDPKLDPSWSWEFISSVAYHGFLPVVTLSVVLIGGYLITMRNNMIGQLGE
DYLAMAEAKGLSDARVRYAYAARNALLPSVTALALSFGALFGGSLITEVVFNYPGVGNLLYLGIVGRDFPLIQGQLLIMT
LAMLLANLAVDLAYVFLDPRLKRA

Sequences:

>Translated_344_residues
MSGPAFGAPHSPPDRWFDLMRFLLKRLGFYAVAFLVAATFNFMIPRLLPGNPADIMLANSGGMIAPEAREALMATFGFID
APLHEQYFAYLGSIFTWDFGLSIKFYPMPVADVLTQALPWTLFLTGAALLISFSVGTLLGVLAAWRRGQLTDVIASPTAL
ALQSVPAVVVALCGLYFLAVRNRFFPTSYAFDPKLDPSWSWEFISSVAYHGFLPVVTLSVVLIGGYLITMRNNMIGQLGE
DYLAMAEAKGLSDARVRYAYAARNALLPSVTALALSFGALFGGSLITEVVFNYPGVGNLLYLGIVGRDFPLIQGQLLIMT
LAMLLANLAVDLAYVFLDPRLKRA
>Mature_343_residues
SGPAFGAPHSPPDRWFDLMRFLLKRLGFYAVAFLVAATFNFMIPRLLPGNPADIMLANSGGMIAPEAREALMATFGFIDA
PLHEQYFAYLGSIFTWDFGLSIKFYPMPVADVLTQALPWTLFLTGAALLISFSVGTLLGVLAAWRRGQLTDVIASPTALA
LQSVPAVVVALCGLYFLAVRNRFFPTSYAFDPKLDPSWSWEFISSVAYHGFLPVVTLSVVLIGGYLITMRNNMIGQLGED
YLAMAEAKGLSDARVRYAYAARNALLPSVTALALSFGALFGGSLITEVVFNYPGVGNLLYLGIVGRDFPLIQGQLLIMTL
AMLLANLAVDLAYVFLDPRLKRA

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=343, Percent_Identity=32.6530612244898, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1787053, Length=324, Percent_Identity=30.2469135802469, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1789888, Length=326, Percent_Identity=30.6748466257669, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI1788504, Length=362, Percent_Identity=29.0055248618785, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787761, Length=321, Percent_Identity=32.0872274143302, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1787497, Length=324, Percent_Identity=26.2345679012346, Blast_Score=111, Evalue=8e-26,
Organism=Escherichia coli, GI1787550, Length=275, Percent_Identity=26.9090909090909, Blast_Score=93, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37461; Mature: 37329

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGPAFGAPHSPPDRWFDLMRFLLKRLGFYAVAFLVAATFNFMIPRLLPGNPADIMLANS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
GGMIAPEAREALMATFGFIDAPLHEQYFAYLGSIFTWDFGLSIKFYPMPVADVLTQALPW
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEECCEEEEECCCHHHHHHHHCCH
TLFLTGAALLISFSVGTLLGVLAAWRRGQLTDVIASPTALALQSVPAVVVALCGLYFLAV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
RNRFFPTSYAFDPKLDPSWSWEFISSVAYHGFLPVVTLSVVLIGGYLITMRNNMIGQLGE
HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHCH
DYLAMAEAKGLSDARVRYAYAARNALLPSVTALALSFGALFGGSLITEVVFNYPGVGNLL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
YLGIVGRDFPLIQGQLLIMTLAMLLANLAVDLAYVFLDPRLKRA
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCC
>Mature Secondary Structure 
SGPAFGAPHSPPDRWFDLMRFLLKRLGFYAVAFLVAATFNFMIPRLLPGNPADIMLANS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
GGMIAPEAREALMATFGFIDAPLHEQYFAYLGSIFTWDFGLSIKFYPMPVADVLTQALPW
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEECCEEEEECCCHHHHHHHHCCH
TLFLTGAALLISFSVGTLLGVLAAWRRGQLTDVIASPTALALQSVPAVVVALCGLYFLAV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
RNRFFPTSYAFDPKLDPSWSWEFISSVAYHGFLPVVTLSVVLIGGYLITMRNNMIGQLGE
HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHCH
DYLAMAEAKGLSDARVRYAYAARNALLPSVTALALSFGALFGGSLITEVVFNYPGVGNLL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
YLGIVGRDFPLIQGQLLIMTLAMLLANLAVDLAYVFLDPRLKRA
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]