| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082442
Identifier: 99082442
GI number: 99082442
Start: 2738987
End: 2739772
Strand: Reverse
Name: 99082442
Synonym: TM1040_2602
Alternate gene names: NA
Gene position: 2739772-2738987 (Counterclockwise)
Preceding gene: 99082450
Following gene: 99082441
Centisome position: 85.59
GC content: 62.34
Gene sequence:
>786_bases ATGCCGGCCTGCTACCTCTTGGTGCCATACTGTTTTATTTGTCCGTGTCGCGTGGAGCGCGAAGGTGCCTGTTTGGAGGC GAGGGTCGTTGTGGTGAAGGTTCTTATTCTTGGTGTCGCGCAGGACGCGATGAGGGCTGTCGATTGGGATGGGGGGCTTT TTGATTACATCCTTGCCATCGAGGAGGCCTGGCACCTGCGGCCCGATTGGACCCATATGCTTCACAGTGACAGTCTTGCC CCCGACGACCGGCCCGTGCTGCTTGAGGCGGGACAGCAAGTCGTCACCGAGGCGGACTATGAGCCGGTGCTGACCCATTT CGGTGGGGCGGCCTATACCGGCAGTGATTTGGTCTTGGCGGCGAGCTATTGGGCGTTGGCGGCGCTAGAACCTGCGCAGG TGTTCTGTATGGGATGCGAGTTTGACTCCCCCGGAGCCCCCATCGAAGGGGACGCAAGAGCCGGCGCCTCCCGGTCAAAT GGCGCGCGCGACCTGACAGCGAAGGCGCGTCGACTGGAGTATTTTGCCTCGCTCTGTGGCTGTGCCATTGCCAACCTCAG CTCCGAGAGCAGCGTTCTGCCCTTTCAACGGGCGACATTTGATGGCTTGGACCAGGTGCGGCCAGCCTATCCGTCCGAGG AGGCGTCTATGGTGGCACGCCAGCTTGAGCAGCAATACGGCGACCCTGCCAGCCCGAACGCGCAATACCCCTGCGCCCAA GGTATGGCCGAAATCGACGCGGCCTGGCGCAGGTGTTTCACACTGCGGGATGCGGCCGTGGCCTGA
Upstream 100 bases:
>100_bases CACCCAAGAGTCAAGAAAAAGGGCGACTGGTAGAGATCACCTCCCCTACCAGCAAGCGCGTGTCATCCGACCCCACCATT TCTGGCAGGTCGTCAGTGCG
Downstream 100 bases:
>100_bases GGGGCGCGGGTTTGATATTGCCGAGCCCCTGAGACATCTGCCAAACAGCCGCAAGACTTACGCGCGCTGTTTTGCAAAGG ATCTCTTATGGACGCGACAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 261; Mature: 260
Protein sequence:
>261_residues MPACYLLVPYCFICPCRVEREGACLEARVVVVKVLILGVAQDAMRAVDWDGGLFDYILAIEEAWHLRPDWTHMLHSDSLA PDDRPVLLEAGQQVVTEADYEPVLTHFGGAAYTGSDLVLAASYWALAALEPAQVFCMGCEFDSPGAPIEGDARAGASRSN GARDLTAKARRLEYFASLCGCAIANLSSESSVLPFQRATFDGLDQVRPAYPSEEASMVARQLEQQYGDPASPNAQYPCAQ GMAEIDAAWRRCFTLRDAAVA
Sequences:
>Translated_261_residues MPACYLLVPYCFICPCRVEREGACLEARVVVVKVLILGVAQDAMRAVDWDGGLFDYILAIEEAWHLRPDWTHMLHSDSLA PDDRPVLLEAGQQVVTEADYEPVLTHFGGAAYTGSDLVLAASYWALAALEPAQVFCMGCEFDSPGAPIEGDARAGASRSN GARDLTAKARRLEYFASLCGCAIANLSSESSVLPFQRATFDGLDQVRPAYPSEEASMVARQLEQQYGDPASPNAQYPCAQ GMAEIDAAWRRCFTLRDAAVA >Mature_260_residues PACYLLVPYCFICPCRVEREGACLEARVVVVKVLILGVAQDAMRAVDWDGGLFDYILAIEEAWHLRPDWTHMLHSDSLAP DDRPVLLEAGQQVVTEADYEPVLTHFGGAAYTGSDLVLAASYWALAALEPAQVFCMGCEFDSPGAPIEGDARAGASRSNG ARDLTAKARRLEYFASLCGCAIANLSSESSVLPFQRATFDGLDQVRPAYPSEEASMVARQLEQQYGDPASPNAQYPCAQG MAEIDAAWRRCFTLRDAAVA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28333; Mature: 28202
Theoretical pI: Translated: 4.29; Mature: 4.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 4.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPACYLLVPYCFICPCRVEREGACLEARVVVVKVLILGVAQDAMRAVDWDGGLFDYILAI CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH EEAWHLRPDWTHMLHSDSLAPDDRPVLLEAGQQVVTEADYEPVLTHFGGAAYTGSDLVLA HHHHCCCCCHHHHHHCCCCCCCCCCHHHHHCHHHHHHCCCHHHHHHCCCCEECCCCHHHH ASYWALAALEPAQVFCMGCEFDSPGAPIEGDARAGASRSNGARDLTAKARRLEYFASLCG HHHHHHHHCCCHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH CAIANLSSESSVLPFQRATFDGLDQVRPAYPSEEASMVARQLEQQYGDPASPNAQYPCAQ HHHHCCCCCCCCCCHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHH GMAEIDAAWRRCFTLRDAAVA HHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PACYLLVPYCFICPCRVEREGACLEARVVVVKVLILGVAQDAMRAVDWDGGLFDYILAI CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH EEAWHLRPDWTHMLHSDSLAPDDRPVLLEAGQQVVTEADYEPVLTHFGGAAYTGSDLVLA HHHHCCCCCHHHHHHCCCCCCCCCCHHHHHCHHHHHHCCCHHHHHHCCCCEECCCCHHHH ASYWALAALEPAQVFCMGCEFDSPGAPIEGDARAGASRSNGARDLTAKARRLEYFASLCG HHHHHHHHCCCHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH CAIANLSSESSVLPFQRATFDGLDQVRPAYPSEEASMVARQLEQQYGDPASPNAQYPCAQ HHHHCCCCCCCCCCHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHH GMAEIDAAWRRCFTLRDAAVA HHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA