Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082442

Identifier: 99082442

GI number: 99082442

Start: 2738987

End: 2739772

Strand: Reverse

Name: 99082442

Synonym: TM1040_2602

Alternate gene names: NA

Gene position: 2739772-2738987 (Counterclockwise)

Preceding gene: 99082450

Following gene: 99082441

Centisome position: 85.59

GC content: 62.34

Gene sequence:

>786_bases
ATGCCGGCCTGCTACCTCTTGGTGCCATACTGTTTTATTTGTCCGTGTCGCGTGGAGCGCGAAGGTGCCTGTTTGGAGGC
GAGGGTCGTTGTGGTGAAGGTTCTTATTCTTGGTGTCGCGCAGGACGCGATGAGGGCTGTCGATTGGGATGGGGGGCTTT
TTGATTACATCCTTGCCATCGAGGAGGCCTGGCACCTGCGGCCCGATTGGACCCATATGCTTCACAGTGACAGTCTTGCC
CCCGACGACCGGCCCGTGCTGCTTGAGGCGGGACAGCAAGTCGTCACCGAGGCGGACTATGAGCCGGTGCTGACCCATTT
CGGTGGGGCGGCCTATACCGGCAGTGATTTGGTCTTGGCGGCGAGCTATTGGGCGTTGGCGGCGCTAGAACCTGCGCAGG
TGTTCTGTATGGGATGCGAGTTTGACTCCCCCGGAGCCCCCATCGAAGGGGACGCAAGAGCCGGCGCCTCCCGGTCAAAT
GGCGCGCGCGACCTGACAGCGAAGGCGCGTCGACTGGAGTATTTTGCCTCGCTCTGTGGCTGTGCCATTGCCAACCTCAG
CTCCGAGAGCAGCGTTCTGCCCTTTCAACGGGCGACATTTGATGGCTTGGACCAGGTGCGGCCAGCCTATCCGTCCGAGG
AGGCGTCTATGGTGGCACGCCAGCTTGAGCAGCAATACGGCGACCCTGCCAGCCCGAACGCGCAATACCCCTGCGCCCAA
GGTATGGCCGAAATCGACGCGGCCTGGCGCAGGTGTTTCACACTGCGGGATGCGGCCGTGGCCTGA

Upstream 100 bases:

>100_bases
CACCCAAGAGTCAAGAAAAAGGGCGACTGGTAGAGATCACCTCCCCTACCAGCAAGCGCGTGTCATCCGACCCCACCATT
TCTGGCAGGTCGTCAGTGCG

Downstream 100 bases:

>100_bases
GGGGCGCGGGTTTGATATTGCCGAGCCCCTGAGACATCTGCCAAACAGCCGCAAGACTTACGCGCGCTGTTTTGCAAAGG
ATCTCTTATGGACGCGACAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MPACYLLVPYCFICPCRVEREGACLEARVVVVKVLILGVAQDAMRAVDWDGGLFDYILAIEEAWHLRPDWTHMLHSDSLA
PDDRPVLLEAGQQVVTEADYEPVLTHFGGAAYTGSDLVLAASYWALAALEPAQVFCMGCEFDSPGAPIEGDARAGASRSN
GARDLTAKARRLEYFASLCGCAIANLSSESSVLPFQRATFDGLDQVRPAYPSEEASMVARQLEQQYGDPASPNAQYPCAQ
GMAEIDAAWRRCFTLRDAAVA

Sequences:

>Translated_261_residues
MPACYLLVPYCFICPCRVEREGACLEARVVVVKVLILGVAQDAMRAVDWDGGLFDYILAIEEAWHLRPDWTHMLHSDSLA
PDDRPVLLEAGQQVVTEADYEPVLTHFGGAAYTGSDLVLAASYWALAALEPAQVFCMGCEFDSPGAPIEGDARAGASRSN
GARDLTAKARRLEYFASLCGCAIANLSSESSVLPFQRATFDGLDQVRPAYPSEEASMVARQLEQQYGDPASPNAQYPCAQ
GMAEIDAAWRRCFTLRDAAVA
>Mature_260_residues
PACYLLVPYCFICPCRVEREGACLEARVVVVKVLILGVAQDAMRAVDWDGGLFDYILAIEEAWHLRPDWTHMLHSDSLAP
DDRPVLLEAGQQVVTEADYEPVLTHFGGAAYTGSDLVLAASYWALAALEPAQVFCMGCEFDSPGAPIEGDARAGASRSNG
ARDLTAKARRLEYFASLCGCAIANLSSESSVLPFQRATFDGLDQVRPAYPSEEASMVARQLEQQYGDPASPNAQYPCAQG
MAEIDAAWRRCFTLRDAAVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28333; Mature: 28202

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPACYLLVPYCFICPCRVEREGACLEARVVVVKVLILGVAQDAMRAVDWDGGLFDYILAI
CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
EEAWHLRPDWTHMLHSDSLAPDDRPVLLEAGQQVVTEADYEPVLTHFGGAAYTGSDLVLA
HHHHCCCCCHHHHHHCCCCCCCCCCHHHHHCHHHHHHCCCHHHHHHCCCCEECCCCHHHH
ASYWALAALEPAQVFCMGCEFDSPGAPIEGDARAGASRSNGARDLTAKARRLEYFASLCG
HHHHHHHHCCCHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
CAIANLSSESSVLPFQRATFDGLDQVRPAYPSEEASMVARQLEQQYGDPASPNAQYPCAQ
HHHHCCCCCCCCCCHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHH
GMAEIDAAWRRCFTLRDAAVA
HHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PACYLLVPYCFICPCRVEREGACLEARVVVVKVLILGVAQDAMRAVDWDGGLFDYILAI
CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
EEAWHLRPDWTHMLHSDSLAPDDRPVLLEAGQQVVTEADYEPVLTHFGGAAYTGSDLVLA
HHHHCCCCCHHHHHHCCCCCCCCCCHHHHHCHHHHHHCCCHHHHHHCCCCEECCCCHHHH
ASYWALAALEPAQVFCMGCEFDSPGAPIEGDARAGASRSNGARDLTAKARRLEYFASLCG
HHHHHHHHCCCHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
CAIANLSSESSVLPFQRATFDGLDQVRPAYPSEEASMVARQLEQQYGDPASPNAQYPCAQ
HHHHCCCCCCCCCCHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHH
GMAEIDAAWRRCFTLRDAAVA
HHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA