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The map label for this gene is clpS

Identifier: 99082374

GI number: 99082374

Start: 2674632

End: 2674973

Strand: Reverse

Name: clpS

Synonym: TM1040_2534

Alternate gene names: 99082374

Gene position: 2674973-2674632 (Counterclockwise)

Preceding gene: 99082377

Following gene: 99082373

Centisome position: 83.57

GC content: 54.39

Gene sequence:

>342_bases
ATGCTAATGCAGCCCTTAATGATGTCGGACAATCCGGATGACGAGAGCGATCTTGGTCTGTTGACCAAGACGCGCCCGCG
TACGCAGCGGCCGCCGCGCTACAAGGTGCTGCTGCTGAACGACGACTACACACCGATGGAGTTCGTGGTCATCGTTCTGG
AGCGGTTCTTCGGTCTCAATCACGCGCAAGCCTTTGAAATCATGCTGACTGTTCACAAAAAAGGTCTCGCGGTAGTGGGT
GTATTCAGCCATGAGGTTGCCGAAACCAAGGTTGCGCAGGTGATGGATTATGCCCGTCGCCATCAGCATCCTTTGCAGTG
CACCATGGAAAAAGACGACTGA

Upstream 100 bases:

>100_bases
TTCTAGACATTATCCCGGCCTCAATCTCTTTTCCTTGTGGGGTCTTCCGCTATATAAGCCGGTGACGAAATCAGATGCAC
CACTGGAAACTGTTGATCCT

Downstream 100 bases:

>100_bases
CCCGCGTCTGCGCGTCTGGTCTGGGAAAGGTCTCTTCACATGTCTCAACGCCTGAGCCTCGTGGTTCAATCAGGCGATTT
TCGCGTTCCCGATGAGGGGC

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MLMQPLMMSDNPDDESDLGLLTKTRPRTQRPPRYKVLLLNDDYTPMEFVVIVLERFFGLNHAQAFEIMLTVHKKGLAVVG
VFSHEVAETKVAQVMDYARRHQHPLQCTMEKDD

Sequences:

>Translated_113_residues
MLMQPLMMSDNPDDESDLGLLTKTRPRTQRPPRYKVLLLNDDYTPMEFVVIVLERFFGLNHAQAFEIMLTVHKKGLAVVG
VFSHEVAETKVAQVMDYARRHQHPLQCTMEKDD
>Mature_113_residues
MLMQPLMMSDNPDDESDLGLLTKTRPRTQRPPRYKVLLLNDDYTPMEFVVIVLERFFGLNHAQAFEIMLTVHKKGLAVVG
VFSHEVAETKVAQVMDYARRHQHPLQCTMEKDD

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

Organism=Escherichia coli, GI1787108, Length=89, Percent_Identity=56.1797752808989, Blast_Score=107, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS_SILST (Q1GDK0)

Other databases:

- EMBL:   CP000377
- RefSeq:   YP_614528.1
- ProteinModelPortal:   Q1GDK0
- SMR:   Q1GDK0
- STRING:   Q1GDK0
- GeneID:   4076536
- GenomeReviews:   CP000377_GR
- KEGG:   sit:TM1040_2534
- eggNOG:   COG2127
- HOGENOM:   HBG644923
- OMA:   FVIHILE
- PhylomeDB:   Q1GDK0
- ProtClustDB:   CLSK2767334
- BioCyc:   SSP292414:TM1040_2534-MONOMER
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 13086; Mature: 13086

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
7.1 %Met     (Translated Protein)
8.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
7.1 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMQPLMMSDNPDDESDLGLLTKTRPRTQRPPRYKVLLLNDDYTPMEFVVIVLERFFGLN
CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC
HAQAFEIMLTVHKKGLAVVGVFSHEVAETKVAQVMDYARRHQHPLQCTMEKDD
CCHHHHEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
>Mature Secondary Structure
MLMQPLMMSDNPDDESDLGLLTKTRPRTQRPPRYKVLLLNDDYTPMEFVVIVLERFFGLN
CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC
HAQAFEIMLTVHKKGLAVVGVFSHEVAETKVAQVMDYARRHQHPLQCTMEKDD
CCHHHHEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA