| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99082330
Identifier: 99082330
GI number: 99082330
Start: 2630666
End: 2631304
Strand: Reverse
Name: 99082330
Synonym: TM1040_2490
Alternate gene names: NA
Gene position: 2631304-2630666 (Counterclockwise)
Preceding gene: 99082331
Following gene: 99082329
Centisome position: 82.2
GC content: 55.09
Gene sequence:
>639_bases ATGGCCTATGTGAAGTGGATTTTCATTCTGATCTTCTGGCTCTTTGTTGGGAGCTTTCTGCACTACACGTTGCCCCAATA TGACGTCGTGCGCATCGTCAACACTTATGAAGAGCGCAAGGAGCTGGGCGATTGGACGCGTATGTTCTGGTCGACGCCAG ACAGCCAAAGCGCCGCGCTCCTCAATCGCGATGTACAGTTCATTCAGGCGGTGCGCCCCAATGGCGATGCTATTGTCTAT CGCAACGAGGACACCGGCTGGAATTGGCCGCCCTATTTCAAATTCGACACCGCCAATCTCTACACAGAGGCGAATGATGC GATTTCCACCAAAGACGACCCGGAGTGGGTACGGATCATGCATTATGGCTGGCGCAGTCAGCTTCTGACATCGTTCCCCA ATGCGGTGTCCATCTCTCCGGCGGCGGGACCGGATGACAAGCCGATCAATTGGATTTCGATCAGTATTCTGGTGCTGCTC GCGGCTGTGAGCTGGGCGATATTTGTGCGTCTGCGTCGCTTCAAACGCAATCGGTTGGATCCGTTGTTCGAGAACGTCGA AGATGGATTCTATGCCGCCGGGGATGCGATTGATGACCGCACCCGTGGCCTGCGGCGCTGGTTTGGTCGAAAGTCTTGA
Upstream 100 bases:
>100_bases ATCTCGGGCTCAGTCGCCGCAAAATTTCGCCTTATGTCATTGCTTTGCGACGCCGCAGATCCGACATTAGATAAGGTGGC GCAGTGTTTGAGGGGGCAAA
Downstream 100 bases:
>100_bases CGCGAAACCGCATCCTCCAACGCGCGGTTTCGTTTGAAAGTCCTACTTGGTTTTTGCCGTGAATATGGGTCCTGTGTCCT GTGCCGATTAATTGGGCCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 212; Mature: 211
Protein sequence:
>212_residues MAYVKWIFILIFWLFVGSFLHYTLPQYDVVRIVNTYEERKELGDWTRMFWSTPDSQSAALLNRDVQFIQAVRPNGDAIVY RNEDTGWNWPPYFKFDTANLYTEANDAISTKDDPEWVRIMHYGWRSQLLTSFPNAVSISPAAGPDDKPINWISISILVLL AAVSWAIFVRLRRFKRNRLDPLFENVEDGFYAAGDAIDDRTRGLRRWFGRKS
Sequences:
>Translated_212_residues MAYVKWIFILIFWLFVGSFLHYTLPQYDVVRIVNTYEERKELGDWTRMFWSTPDSQSAALLNRDVQFIQAVRPNGDAIVY RNEDTGWNWPPYFKFDTANLYTEANDAISTKDDPEWVRIMHYGWRSQLLTSFPNAVSISPAAGPDDKPINWISISILVLL AAVSWAIFVRLRRFKRNRLDPLFENVEDGFYAAGDAIDDRTRGLRRWFGRKS >Mature_211_residues AYVKWIFILIFWLFVGSFLHYTLPQYDVVRIVNTYEERKELGDWTRMFWSTPDSQSAALLNRDVQFIQAVRPNGDAIVYR NEDTGWNWPPYFKFDTANLYTEANDAISTKDDPEWVRIMHYGWRSQLLTSFPNAVSISPAAGPDDKPINWISISILVLLA AVSWAIFVRLRRFKRNRLDPLFENVEDGFYAAGDAIDDRTRGLRRWFGRKS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011088 [H]
Pfam domain/function: PF07509 DUF1523 [H]
EC number: NA
Molecular weight: Translated: 24856; Mature: 24725
Theoretical pI: Translated: 7.65; Mature: 7.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYVKWIFILIFWLFVGSFLHYTLPQYDVVRIVNTYEERKELGDWTRMFWSTPDSQSAAL CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH LNRDVQFIQAVRPNGDAIVYRNEDTGWNWPPYFKFDTANLYTEANDAISTKDDPEWVRIM HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEECCCHHEECCCCCCCCCCCHHHHHHH HYGWRSQLLTSFPNAVSISPAAGPDDKPINWISISILVLLAAVSWAIFVRLRRFKRNRLD HHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PLFENVEDGFYAAGDAIDDRTRGLRRWFGRKS HHHHHHHCCCEECCCCHHHHHHHHHHHHCCCC >Mature Secondary Structure AYVKWIFILIFWLFVGSFLHYTLPQYDVVRIVNTYEERKELGDWTRMFWSTPDSQSAAL HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH LNRDVQFIQAVRPNGDAIVYRNEDTGWNWPPYFKFDTANLYTEANDAISTKDDPEWVRIM HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEECCCHHEECCCCCCCCCCCHHHHHHH HYGWRSQLLTSFPNAVSISPAAGPDDKPINWISISILVLLAAVSWAIFVRLRRFKRNRLD HHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PLFENVEDGFYAAGDAIDDRTRGLRRWFGRKS HHHHHHHCCCEECCCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]