| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082285
Identifier: 99082285
GI number: 99082285
Start: 2586837
End: 2587604
Strand: Direct
Name: 99082285
Synonym: TM1040_2445
Alternate gene names: NA
Gene position: 2586837-2587604 (Clockwise)
Preceding gene: 99082282
Following gene: 99082286
Centisome position: 80.81
GC content: 58.98
Gene sequence:
>768_bases ATGACTGATCTTATTCCCTTTCTCGCGCCGGCCGGATTCGTGCTCGCCTTCATCATTGCGCTTATTGCAGGCACCATAAA AGGCCTTGTGGGCTTTGCCATGCCCATGATCATGGTCTCGGGCCTAAGCTCCATCATGGCACCGGACCTGGCTTTGGCAG GGCTGATTCTCCCCACGCTCGTCACCAACGGGTTTCAAGCCCTGAAACAGGGACCGGCCGCCGCTTGGGCGTCGATGAAA CGGTTTCGCACATTCCTTCTTGTGGGGGGGCTCTTCTTGCTGATGAGTGCGCAACTGGTGCGCCTGCTTCCGCCACAGGT GATGCTGCTCATCATTGGTGCGCCAATCACGCTCTTTGCGTTGACGCAGCTGCTTGGAAAACAGCTCGTTCTGCATGAAG CCTCGCGCCGGATGGAGATCGGCATTGGCGCTTTTGCAGGGTTCATCGGTGGCTTTTCAGGTATTTGGGGCCCCCCGACC GTGGCGTATCTCACCGCGCTCGGGACCGAGAAAAAGGAACAGATGCGCATTCAGGGCGTGATCTACGGCCTTGGGGCCGT TGTCTTGTTCTTTGCTCATATCGGGTCTGGTGTGATGCGCGGCGAGACCCTGCCTTTTTCCATTCTGATGATAGTACCAG CACTCCTTGGCATGTGGGTCGGCGGGCGGCTGCAGGATCGGATCGACCAGAAGACATTCCGCCGCGCCACCTTGTTTGTG CTGCTGATCGCGGGTCTCAACCTGCTGCGCCGCGCCTGGGTGGGCTGA
Upstream 100 bases:
>100_bases CTGCAGCGCAATATTAAATCTCATATGGGCAAATTTTCATTCGATAATTACCCAGAGGTTTTGCAGTGCAGCACGCGCTG GGTGTGCTAAAGGCAGTGGT
Downstream 100 bases:
>100_bases GGCGATGCCCTTTGGCCTCAATACCCGGCTGACAGCCAGTCAGATCGCAAGCGGGACCATTGTGGTATCCGTTGTGGTCC TGCTGCTCAAGCTCGGGGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 255; Mature: 254
Protein sequence:
>255_residues MTDLIPFLAPAGFVLAFIIALIAGTIKGLVGFAMPMIMVSGLSSIMAPDLALAGLILPTLVTNGFQALKQGPAAAWASMK RFRTFLLVGGLFLLMSAQLVRLLPPQVMLLIIGAPITLFALTQLLGKQLVLHEASRRMEIGIGAFAGFIGGFSGIWGPPT VAYLTALGTEKKEQMRIQGVIYGLGAVVLFFAHIGSGVMRGETLPFSILMIVPALLGMWVGGRLQDRIDQKTFRRATLFV LLIAGLNLLRRAWVG
Sequences:
>Translated_255_residues MTDLIPFLAPAGFVLAFIIALIAGTIKGLVGFAMPMIMVSGLSSIMAPDLALAGLILPTLVTNGFQALKQGPAAAWASMK RFRTFLLVGGLFLLMSAQLVRLLPPQVMLLIIGAPITLFALTQLLGKQLVLHEASRRMEIGIGAFAGFIGGFSGIWGPPT VAYLTALGTEKKEQMRIQGVIYGLGAVVLFFAHIGSGVMRGETLPFSILMIVPALLGMWVGGRLQDRIDQKTFRRATLFV LLIAGLNLLRRAWVG >Mature_254_residues TDLIPFLAPAGFVLAFIIALIAGTIKGLVGFAMPMIMVSGLSSIMAPDLALAGLILPTLVTNGFQALKQGPAAAWASMKR FRTFLLVGGLFLLMSAQLVRLLPPQVMLLIIGAPITLFALTQLLGKQLVLHEASRRMEIGIGAFAGFIGGFSGIWGPPTV AYLTALGTEKKEQMRIQGVIYGLGAVVLFFAHIGSGVMRGETLPFSILMIVPALLGMWVGGRLQDRIDQKTFRRATLFVL LIAGLNLLRRAWVG
Specific function: Unknown
COG id: COG0730
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27275; Mature: 27144
Theoretical pI: Translated: 11.71; Mature: 11.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDLIPFLAPAGFVLAFIIALIAGTIKGLVGFAMPMIMVSGLSSIMAPDLALAGLILPTL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VTNGFQALKQGPAAAWASMKRFRTFLLVGGLFLLMSAQLVRLLPPQVMLLIIGAPITLFA HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHH LTQLLGKQLVLHEASRRMEIGIGAFAGFIGGFSGIWGPPTVAYLTALGTEKKEQMRIQGV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHH IYGLGAVVLFFAHIGSGVMRGETLPFSILMIVPALLGMWVGGRLQDRIDQKTFRRATLFV HHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LLIAGLNLLRRAWVG HHHHHHHHHHHHHCC >Mature Secondary Structure TDLIPFLAPAGFVLAFIIALIAGTIKGLVGFAMPMIMVSGLSSIMAPDLALAGLILPTL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VTNGFQALKQGPAAAWASMKRFRTFLLVGGLFLLMSAQLVRLLPPQVMLLIIGAPITLFA HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHH LTQLLGKQLVLHEASRRMEIGIGAFAGFIGGFSGIWGPPTVAYLTALGTEKKEQMRIQGV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHH IYGLGAVVLFFAHIGSGVMRGETLPFSILMIVPALLGMWVGGRLQDRIDQKTFRRATLFV HHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LLIAGLNLLRRAWVG HHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA