| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082263
Identifier: 99082263
GI number: 99082263
Start: 2563205
End: 2564347
Strand: Direct
Name: 99082263
Synonym: TM1040_2423
Alternate gene names: NA
Gene position: 2563205-2564347 (Clockwise)
Preceding gene: 99082262
Following gene: 99082265
Centisome position: 80.08
GC content: 60.54
Gene sequence:
>1143_bases ATGAAAGCTGATGCGCTTCTGAACTCTTATATCGACCTGAACCTTCTGGTTTGTGCCGGCGCCCTGCTGTGGCTCGCCGC GCGTTGGGTTTTGCGACGAACGGCTCTGGCGACCGCCTATGGGCCGCAGCTGCGTTTGCTCAATGGGATGACTGTCCTAC TGGCAGCCATGCCGTTCCTTGTTGTCGCCCTCAATGCCATCGGTATCGGTCACCCGCCCACCCTCTCGGATGTCCTCGTA TCCCAATATCTGCAAGGCAATGTCGGCATGTCCGCAGTGCAGTTTGAATCGATGATTGGCCTGCGCGAAGATCTGGTCCG AGACCTTGTTTACGGCGCAACCTTTGGGAGCCGGGTTGCCACTGTCTTTGTGGTGATCGGAACAGCTGTCTCGCTCTTTT TGCTGGGCTCCGCCATTCTGCGCCTGCACCGTGCATTGGCCTCCGCCTATCGCTGGAAGCGCATTGGCCGCGTTGATCTG CTTTTGAGCGACGATACCGCAGTGGCATACTCCACCCGCGGCCTCTTTCGCCGGTATGTGGTGTTGCCGACGTCGCTGCT GAATGACCCGCAAGATCTGCGCCTGACGCTGGCGCATGAGCTTCAGCATTTTCGCCAGAGGGATGTGGAAATCGCCTTCC TGATGGAATGCCTGCGACCGCTCCTGTTCTGGAACCCCGCCTTCTATCTTTGGCGCCGCGACATGCGGGCGGTCCGCGAA TATGCCTGCGATCAGGCTCTTAGCACCAAGGGCCGCTTCGACCCGCGCAGCTATTGCGAATGTTTAATCCGCGCCACCGA ACGGGCGCGCAAATCCCCTGTCTTCCTCAGCCCGCGCAGCCCCTCTGTCGCCCTGCTTGAGCGTCGCGAAATCTTGCATA CGCCCATGCTTGCACGCCGCATCATCGCGGTTACCGAGCAGCCGCCACGCGGCCGGCTCGGGCTTGTCTGGGGAGGTGTC TCTACAGCCATTGGCTGCGCCGTTATCGCAACTGCCTTCCTGATCCAGCGCCCAACGGACTGGAGCCACGATCGGCTGAT GCTCTCAACAGTAGTCAATCTGGAGCGCATGGCGCAGCGCAGTTCGAACCAGGTCGCCGGGCCGCAGTGGACAAGCTCCA TTTTGATCCCCGCAGGTCGCTAA
Upstream 100 bases:
>100_bases GCTCCCGCGGCCCTCGTGGCGCGGTTGGTCGATGATGAGGATATCACTGATGCCATGCTTGAGGAAATGCGGGCCTTGCT GAACGAAAGGCTGGGGGACA
Downstream 100 bases:
>100_bases AAGACCCCAAGCCCCACCCTATCCGGATCGAGGCTTTGCCCATCGCGTTCAGGCTGGGCAATTGTACCTGCCCCTGCCTT CAGCGTGTGGGAACGGGAAC
Product: peptidase M56, BlaR1
Products: NA
Alternate protein names: BlaR1 Peptidase; Slt Family Transglycosylase
Number of amino acids: Translated: 380; Mature: 380
Protein sequence:
>380_residues MKADALLNSYIDLNLLVCAGALLWLAARWVLRRTALATAYGPQLRLLNGMTVLLAAMPFLVVALNAIGIGHPPTLSDVLV SQYLQGNVGMSAVQFESMIGLREDLVRDLVYGATFGSRVATVFVVIGTAVSLFLLGSAILRLHRALASAYRWKRIGRVDL LLSDDTAVAYSTRGLFRRYVVLPTSLLNDPQDLRLTLAHELQHFRQRDVEIAFLMECLRPLLFWNPAFYLWRRDMRAVRE YACDQALSTKGRFDPRSYCECLIRATERARKSPVFLSPRSPSVALLERREILHTPMLARRIIAVTEQPPRGRLGLVWGGV STAIGCAVIATAFLIQRPTDWSHDRLMLSTVVNLERMAQRSSNQVAGPQWTSSILIPAGR
Sequences:
>Translated_380_residues MKADALLNSYIDLNLLVCAGALLWLAARWVLRRTALATAYGPQLRLLNGMTVLLAAMPFLVVALNAIGIGHPPTLSDVLV SQYLQGNVGMSAVQFESMIGLREDLVRDLVYGATFGSRVATVFVVIGTAVSLFLLGSAILRLHRALASAYRWKRIGRVDL LLSDDTAVAYSTRGLFRRYVVLPTSLLNDPQDLRLTLAHELQHFRQRDVEIAFLMECLRPLLFWNPAFYLWRRDMRAVRE YACDQALSTKGRFDPRSYCECLIRATERARKSPVFLSPRSPSVALLERREILHTPMLARRIIAVTEQPPRGRLGLVWGGV STAIGCAVIATAFLIQRPTDWSHDRLMLSTVVNLERMAQRSSNQVAGPQWTSSILIPAGR >Mature_380_residues MKADALLNSYIDLNLLVCAGALLWLAARWVLRRTALATAYGPQLRLLNGMTVLLAAMPFLVVALNAIGIGHPPTLSDVLV SQYLQGNVGMSAVQFESMIGLREDLVRDLVYGATFGSRVATVFVVIGTAVSLFLLGSAILRLHRALASAYRWKRIGRVDL LLSDDTAVAYSTRGLFRRYVVLPTSLLNDPQDLRLTLAHELQHFRQRDVEIAFLMECLRPLLFWNPAFYLWRRDMRAVRE YACDQALSTKGRFDPRSYCECLIRATERARKSPVFLSPRSPSVALLERREILHTPMLARRIIAVTEQPPRGRLGLVWGGV STAIGCAVIATAFLIQRPTDWSHDRLMLSTVVNLERMAQRSSNQVAGPQWTSSILIPAGR
Specific function: Unknown
COG id: COG4219
COG function: function code KT; Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42440; Mature: 42440
Theoretical pI: Translated: 10.52; Mature: 10.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKADALLNSYIDLNLLVCAGALLWLAARWVLRRTALATAYGPQLRLLNGMTVLLAAMPFL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH VVALNAIGIGHPPTLSDVLVSQYLQGNVGMSAVQFESMIGLREDLVRDLVYGATFGSRVA HHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH TVFVVIGTAVSLFLLGSAILRLHRALASAYRWKRIGRVDLLLSDDTAVAYSTRGLFRRYV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHH VLPTSLLNDPQDLRLTLAHELQHFRQRDVEIAFLMECLRPLLFWNPAFYLWRRDMRAVRE HCCHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH YACDQALSTKGRFDPRSYCECLIRATERARKSPVFLSPRSPSVALLERREILHTPMLARR HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHH IIAVTEQPPRGRLGLVWGGVSTAIGCAVIATAFLIQRPTDWSHDRLMLSTVVNLERMAQR HHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH SSNQVAGPQWTSSILIPAGR CCCCCCCCCCCCCEECCCCC >Mature Secondary Structure MKADALLNSYIDLNLLVCAGALLWLAARWVLRRTALATAYGPQLRLLNGMTVLLAAMPFL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH VVALNAIGIGHPPTLSDVLVSQYLQGNVGMSAVQFESMIGLREDLVRDLVYGATFGSRVA HHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH TVFVVIGTAVSLFLLGSAILRLHRALASAYRWKRIGRVDLLLSDDTAVAYSTRGLFRRYV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHH VLPTSLLNDPQDLRLTLAHELQHFRQRDVEIAFLMECLRPLLFWNPAFYLWRRDMRAVRE HCCHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH YACDQALSTKGRFDPRSYCECLIRATERARKSPVFLSPRSPSVALLERREILHTPMLARR HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHH IIAVTEQPPRGRLGLVWGGVSTAIGCAVIATAFLIQRPTDWSHDRLMLSTVVNLERMAQR HHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH SSNQVAGPQWTSSILIPAGR CCCCCCCCCCCCCEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA