| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082188
Identifier: 99082188
GI number: 99082188
Start: 2469041
End: 2470285
Strand: Direct
Name: 99082188
Synonym: TM1040_2348
Alternate gene names: NA
Gene position: 2469041-2470285 (Clockwise)
Preceding gene: 99082187
Following gene: 99082189
Centisome position: 77.13
GC content: 58.55
Gene sequence:
>1245_bases ATGACGAGTGGGATTTCGCAAACGGAGGCTGTGCCGATCGCAGCCTGCACAATCAGTCGAGACGTTCAGAACTTCGATCT GCTGATCGAAGACATGGAAGCGGTTATGGGCGAGGCTTGGGGCGACCTTGGCTTTACTGAATCGCTCGCGTTTTTCTATC AACCCGAAGCCGAAACTCTGGAGTTCGTGGCGCTTGCGATTGACGCGGAGGATGAGGACAATCTTCCGCTGATGATAGAG ATCATCACCCAGGCCAAATCCCGCAACATCAAGGTCATTCTGGTGGCAGAGGATGTGACGCCCGCCGCGCTGCACAAACT GCTGCGCCAAGGCGCGGATGAATTCATCCCCTACCCTCTGCCGGAACAGGAACTTGCGGCCGCCATTGACCGCTTGCGTA AACCCGAAGAGGCGCCCGCACCCGCAGCGGCGCCACAGCGGGCACATAAGTTGCATGCAGACAGCCAGCGCGAAGGCGCT GTGATCGTGACGCAGGGACTTGCCGGGGGGACCGGTGCGTCCACATTTGCCGTCAACCTCGCCTGGGAGCTTGCGGAGCT CAACTCGGGCGATCGCCCCTCTGTGTGCCTGCTTGATCTCGACCTGCAAACCGGCTCGGTGTCGACCTATCTCGACCTTC CGCGCCGCGAGGCGGTGATGGAGATGCTGAGCGAAACCGAAGCCATGGATGAGGACATCTTTGGCCAATCCCTGATTTCC TTTCAGGACAAGCTGCAGGTGCTCACGTCTCCGGCCGATATGGTGCCGCTGGAGTTCATCACGCCCGAAGATATTTTGCG GGTGGTTGAGATGGCACGGAGCCACTTTGATTTTGTGGTCATCGACATGCCGCACACAATGGTGCAGTGGACCGAAACGG TGCTGAACCTCGCGCATGTCTATTTTGCGATGATCGAACTGGATATGCGCTCGGCGCAGAACGCCTTGCGCGTCAAACGG GCCCTTCAGTCCGAAGACCTGCCCTTTGAAAAACTGCGTTTCCTGCTCAACAGAGCCCCGAGATTCACCGACCTCAACGG CAAAAGCCGGGTGAAGCGCCTTGCTGAAAGTCTTGGCATTTCTATCGACGTGCAACTCCCGGATGGCGGAAAAGCGATCC TGCACAGCTGTGATCATGGCCAACCGCTGGCGATCTCTGCCCCCAAGAACCCTCTGCGCAAGGAAATCGCCAAGCTGGCG AAGAACCTGCATGAGCTGGGACAGGCAGAGGCGGAAGCCGCCTAA
Upstream 100 bases:
>100_bases AACGACACTGATCCCATAGGCGCCGTGTCCCTTGTGAAGGAACCGGCGCTGGTCCAACATCGGCTGGGTGCCGGGGCCAA ACAATGTGGGGATACTGGCG
Downstream 100 bases:
>100_bases GTCGCAACGCGACAGCACGGGAAGGTATCGAAATGTTTTCCAAGTACAAAAAGCAATCCTCTGCGCCTGCTGCCCCCGCA GCGGCCCCTGCCGCGGCTCC
Product: response regulator receiver protein
Products: NA
Alternate protein names: Pilus Assembly Protein CpaE; Response Regulator Receiver Domain-Containing Protein; Septum Site-Determining Protein; Flp Pilus Assembly Protein ATPase CpaE; Flp Pilus Assembly Protein ATPase CpaE-Like Protein; Flp Pilus Assembly Protein ATPase CpaE-Like; Two-Component Response Regulator; Pilus Assembly ATPase CpaE; Response Regulator Receiver; ATPase; Flp Pilus Assembly Response Receiver ATPase CpaE; Flp Pilus Assembly Protein ATPase; Pilus Assembly Protein; Flp Pilus Assembly ATPase CpaE; Response Regulator; Cobyrinic Acid A C-Diamide Synthase; Chromosome Partitioning ATPase; Flp Pilus Assembly Protein; AAA ATPase; PP-Loop Family ATPase; CpaE2 Pilus Assembly Protein
Number of amino acids: Translated: 414; Mature: 413
Protein sequence:
>414_residues MTSGISQTEAVPIAACTISRDVQNFDLLIEDMEAVMGEAWGDLGFTESLAFFYQPEAETLEFVALAIDAEDEDNLPLMIE IITQAKSRNIKVILVAEDVTPAALHKLLRQGADEFIPYPLPEQELAAAIDRLRKPEEAPAPAAAPQRAHKLHADSQREGA VIVTQGLAGGTGASTFAVNLAWELAELNSGDRPSVCLLDLDLQTGSVSTYLDLPRREAVMEMLSETEAMDEDIFGQSLIS FQDKLQVLTSPADMVPLEFITPEDILRVVEMARSHFDFVVIDMPHTMVQWTETVLNLAHVYFAMIELDMRSAQNALRVKR ALQSEDLPFEKLRFLLNRAPRFTDLNGKSRVKRLAESLGISIDVQLPDGGKAILHSCDHGQPLAISAPKNPLRKEIAKLA KNLHELGQAEAEAA
Sequences:
>Translated_414_residues MTSGISQTEAVPIAACTISRDVQNFDLLIEDMEAVMGEAWGDLGFTESLAFFYQPEAETLEFVALAIDAEDEDNLPLMIE IITQAKSRNIKVILVAEDVTPAALHKLLRQGADEFIPYPLPEQELAAAIDRLRKPEEAPAPAAAPQRAHKLHADSQREGA VIVTQGLAGGTGASTFAVNLAWELAELNSGDRPSVCLLDLDLQTGSVSTYLDLPRREAVMEMLSETEAMDEDIFGQSLIS FQDKLQVLTSPADMVPLEFITPEDILRVVEMARSHFDFVVIDMPHTMVQWTETVLNLAHVYFAMIELDMRSAQNALRVKR ALQSEDLPFEKLRFLLNRAPRFTDLNGKSRVKRLAESLGISIDVQLPDGGKAILHSCDHGQPLAISAPKNPLRKEIAKLA KNLHELGQAEAEAA >Mature_413_residues TSGISQTEAVPIAACTISRDVQNFDLLIEDMEAVMGEAWGDLGFTESLAFFYQPEAETLEFVALAIDAEDEDNLPLMIEI ITQAKSRNIKVILVAEDVTPAALHKLLRQGADEFIPYPLPEQELAAAIDRLRKPEEAPAPAAAPQRAHKLHADSQREGAV IVTQGLAGGTGASTFAVNLAWELAELNSGDRPSVCLLDLDLQTGSVSTYLDLPRREAVMEMLSETEAMDEDIFGQSLISF QDKLQVLTSPADMVPLEFITPEDILRVVEMARSHFDFVVIDMPHTMVQWTETVLNLAHVYFAMIELDMRSAQNALRVKRA LQSEDLPFEKLRFLLNRAPRFTDLNGKSRVKRLAESLGISIDVQLPDGGKAILHSCDHGQPLAISAPKNPLRKEIAKLAK NLHELGQAEAEAA
Specific function: Unknown
COG id: COG4963
COG function: function code U; Flp pilus assembly protein, ATPase CpaE
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45558; Mature: 45426
Theoretical pI: Translated: 4.37; Mature: 4.37
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSGISQTEAVPIAACTISRDVQNFDLLIEDMEAVMGEAWGDLGFTESLAFFYQPEAETL CCCCCCCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHEEECCCCHHE EFVALAIDAEDEDNLPLMIEIITQAKSRNIKVILVAEDVTPAALHKLLRQGADEFIPYPL EEEEEEEECCCCCCCCEEEEEHHHHCCCCEEEEEEECCCCHHHHHHHHHCCHHHCCCCCC PEQELAAAIDRLRKPEEAPAPAAAPQRAHKLHADSQREGAVIVTQGLAGGTGASTFAVNL CHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEECCCCCCCCCEEEEEE AWELAELNSGDRPSVCLLDLDLQTGSVSTYLDLPRREAVMEMLSETEAMDEDIFGQSLIS EEEHHHCCCCCCCCEEEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH FQDKLQVLTSPADMVPLEFITPEDILRVVEMARSHFDFVVIDMPHTMVQWTETVLNLAHV HHHHHHHHCCCCHHCCEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH YFAMIELDMRSAQNALRVKRALQSEDLPFEKLRFLLNRAPRFTDLNGKSRVKRLAESLGI HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC SIDVQLPDGGKAILHSCDHGQPLAISAPKNPLRKEIAKLAKNLHELGQAEAEAA EEEEECCCCCHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHCCCC >Mature Secondary Structure TSGISQTEAVPIAACTISRDVQNFDLLIEDMEAVMGEAWGDLGFTESLAFFYQPEAETL CCCCCCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHEEECCCCHHE EFVALAIDAEDEDNLPLMIEIITQAKSRNIKVILVAEDVTPAALHKLLRQGADEFIPYPL EEEEEEEECCCCCCCCEEEEEHHHHCCCCEEEEEEECCCCHHHHHHHHHCCHHHCCCCCC PEQELAAAIDRLRKPEEAPAPAAAPQRAHKLHADSQREGAVIVTQGLAGGTGASTFAVNL CHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEECCCCCCCCCEEEEEE AWELAELNSGDRPSVCLLDLDLQTGSVSTYLDLPRREAVMEMLSETEAMDEDIFGQSLIS EEEHHHCCCCCCCCEEEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH FQDKLQVLTSPADMVPLEFITPEDILRVVEMARSHFDFVVIDMPHTMVQWTETVLNLAHV HHHHHHHHCCCCHHCCEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH YFAMIELDMRSAQNALRVKRALQSEDLPFEKLRFLLNRAPRFTDLNGKSRVKRLAESLGI HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC SIDVQLPDGGKAILHSCDHGQPLAISAPKNPLRKEIAKLAKNLHELGQAEAEAA EEEEECCCCCHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA