| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is ppdK [H]
Identifier: 99082149
GI number: 99082149
Start: 2427681
End: 2430245
Strand: Reverse
Name: ppdK [H]
Synonym: TM1040_2309
Alternate gene names: 99082149
Gene position: 2430245-2427681 (Counterclockwise)
Preceding gene: 99082150
Following gene: 99082148
Centisome position: 75.92
GC content: 64.29
Gene sequence:
>2565_bases ATGGACACCACCCCGAAGTCCACTTTGATCACCGCGACCGCACCGATCGCCAATCAGACCCATGGCGGGCGGGCCAAGTG CCTGCAGCGGCTGGTTCGCTTGGAGCTACCGGTGCCGCAGACCGTGGCGCTCTCGTTTGATGCGGTGCATGAGATCGCCG AGGGCTACATGGTGGATGTGAACGCGATCCTTGCGGATCTGCGACCCGGCGCGCTTTTGTGTGTGCGGCCCTCCTCCGAG GATCCCGACTGGGGCGGTCCCGGAGCGGTTTTGAACATCGGCATGAATGACGCGCGCTACGTGGAGTTGAGCGACACGCT GGGACCGGCGGCGGCGGCGGCGCTCTATTTGCGGTTTGTGCAGTCCTATGCGGTGCATGTGGCGCGGCTGGACCCGGATG TGTTTGAGGACGTCGAGGACGGCGGCCCCGATGCGCTGAGCGAAATGCTGCAGGCCTATGAGGCTGAGGCTGAAGAGCCG TTCCCCCAAGATCCGGGCGAGCAGCTGGCGGCGGTTCTGCGCTCCATGGCGCGCGCGTGGGAGGGCACGTCCGCGCGGCT GTTGCGCGCCGCGAAAGGCGCGCCCGAAGACGCGGGGCTGGGTCTCATTGTGCAAGAGATGGTGCCGGGGCTGGGGCAGG GTGAATGCGGTTCAGGCGTGTTGCAGCTTGTGAATTCGCAGACCGGGCTGCCGCAGATCACCGGACGCTATCTGAGCCAA AGCCAGGGGCGCGACGCGCTCGGGGTTGATGCGGAGGCAATCTATCTCGAGCAGGACGAACGCGGCCCCTCGCTTGAGGA GCTGGCGCCCGAGGCCTTTGCCGAGTTGAAGGCCCATGCGGCGCTGATGCGTAGAAAACTGCGTGCCGAAATGCAGGTGG AATTCGTCATCGAAAATGGCCGTGTGCATATTCTCGACGGGGTGCGGGTACCACGTTCTTCGCGCGCGGCGGTGCGGATT GCGGTGCGGCTGGCAGAGGACGGGATCATTCCCGCCGAAGAGGCGCTGATGCGGGTGGATGCCTATTCGCTCAACGAATT GCTGCACCGCCAGGTGGACCCGAATGCCAAACGGGACGTGATTGGCAGCGGCATTGCCGCAAGTCCGGGCGCGGCCACCG GGCGTCTGGTTTTCACCGCGACCGAGGCGCAGGCCAGCAAGTCGCGTGGCGAACCCTGCATTCTGGCGCGACGTGAGACT TCGCCAGAGGATGTGCGGGGCATGCATGCGGCTGCGGGTGTACTGACGGAAAAAGGCGGAATGACCAGCCATGCGGCGGT GATTGGTCGCGGGCTGGGGCTGCCCTGTATCGTGGGCGCGTCGCGCCTGCGGTTCGACAGTCGGCGCAAACAGCTGACGG CCCCGGATGGGCGAGTTTTCAAGGCAGGCGAGATCATCACCGTGGATGGCACCTCGGGCGAGGTGCTTGCTGGAGAACCC GCCATGGTCGAGGCCGCCGAGGATGATGCGCTGGTGACGTTGATGGCCTGGGCGGATGCGGCGCGCGACATTGCGATCCG CGCCAATGCCGACACGCCTGCCGATGCGCAGACCGCGCGCAATTTCAACGCCGAGGGTATTGGTCTGTGCCGGACCGAGC ACATGTTCTTTGATCCGGGTCGCCTTACGGTGATGCGCGAGATGATCTTTGCCGAGACCTCTTCCGGGCGGGCGGCGGTT CTGGCGCGTCTCCTGCCGATGCAGCGCAAGGATTTTCGCGAGCTTTTCCGTATCATGGAAGGTCTGCCGGTGTGCATCCG GCTGTTTGACCCGCCATTGCATGAATTCCTGCCCACCACCACTGCCGGACAGCGCGAACTCTCCGAGGCTCTGGGCCTGC CGGTGAGCGACGTGACACGCCGGGTTGCGGAAATGGGGGAGTACAACCCCATGCTGGGTCTGCGCGGCGTGCGTCTCGGG GTGACGGTGCCCGAGATCTACGACATGCAGGCGCGCGCGATCTTTGAAGCCACGCTCGAGGCCTCGCGCGATGGGGCGCC AGTGGTGCCTGAGATCATGATCCCGTTGGTGTCTGCCAAACGCGAAGTGGAACTGGTCAAGGCGCGTATCGATGCGGTGG CCGCAGCCGTGAAATCCGAGCGCGGCGCCGATTTCACCTATCGGCTCGGTGTGATGGTCGAGACCCCACGGGCGGCCCTC CGGGCCGATGAGATTGCCGCGCATACGGCCTTCATGAGCTTTGGCACCAACGATCTCACGCAGATGACCTATGGTCTGTC GCGCGATGATGCGGGACGGTTCATGTCGGCCTATGTGCAGCAGGGCGTCTTTCCCGAAGATCCCTTCCATGTGCTGGATG TGGACGGCGTCGGAGAGCTGTTGCAACTCGGGGTGCAGCGGGGGCGGATGGCGAAGCCCGAAATCACCCTGTCGATCTGT GGTGAACACGGTGGCAATCCCGAATCAATCGCGTTTTGCCGCGAGGCGGGCTTTGATTACGTGTCTTGCTCGCCCTTCCG GGTGCCTGTCGCGCGGCTTGCGGCAGCACAATTGGCGATCGCGGATAAAACCGGCCAAATTGCGCCGACATACATAAAAA ATTAA
Upstream 100 bases:
>100_bases AGCAGGGGCGACGTGCTTTTCCTTGCGGGACGGCCTGCGCGCATTATGCTCAGGGGCAGGGAGGATCGCTGCGTTGCAGA AACAGACAGGGGACGAACCG
Downstream 100 bases:
>100_bases CGATTTCAGGGTTCTTCGTCGGCAAAAGACACATCGCCGCATCAAGATGTACCTTGGGGCATAACGGGTATACGTTCGCT TGGGTGGACGTTTTGATACA
Product: pyruvate phosphate dikinase
Products: NA
Alternate protein names: Pyruvate, orthophosphate dikinase [H]
Number of amino acids: Translated: 854; Mature: 854
Protein sequence:
>854_residues MDTTPKSTLITATAPIANQTHGGRAKCLQRLVRLELPVPQTVALSFDAVHEIAEGYMVDVNAILADLRPGALLCVRPSSE DPDWGGPGAVLNIGMNDARYVELSDTLGPAAAAALYLRFVQSYAVHVARLDPDVFEDVEDGGPDALSEMLQAYEAEAEEP FPQDPGEQLAAVLRSMARAWEGTSARLLRAAKGAPEDAGLGLIVQEMVPGLGQGECGSGVLQLVNSQTGLPQITGRYLSQ SQGRDALGVDAEAIYLEQDERGPSLEELAPEAFAELKAHAALMRRKLRAEMQVEFVIENGRVHILDGVRVPRSSRAAVRI AVRLAEDGIIPAEEALMRVDAYSLNELLHRQVDPNAKRDVIGSGIAASPGAATGRLVFTATEAQASKSRGEPCILARRET SPEDVRGMHAAAGVLTEKGGMTSHAAVIGRGLGLPCIVGASRLRFDSRRKQLTAPDGRVFKAGEIITVDGTSGEVLAGEP AMVEAAEDDALVTLMAWADAARDIAIRANADTPADAQTARNFNAEGIGLCRTEHMFFDPGRLTVMREMIFAETSSGRAAV LARLLPMQRKDFRELFRIMEGLPVCIRLFDPPLHEFLPTTTAGQRELSEALGLPVSDVTRRVAEMGEYNPMLGLRGVRLG VTVPEIYDMQARAIFEATLEASRDGAPVVPEIMIPLVSAKREVELVKARIDAVAAAVKSERGADFTYRLGVMVETPRAAL RADEIAAHTAFMSFGTNDLTQMTYGLSRDDAGRFMSAYVQQGVFPEDPFHVLDVDGVGELLQLGVQRGRMAKPEITLSIC GEHGGNPESIAFCREAGFDYVSCSPFRVPVARLAAAQLAIADKTGQIAPTYIKN
Sequences:
>Translated_854_residues MDTTPKSTLITATAPIANQTHGGRAKCLQRLVRLELPVPQTVALSFDAVHEIAEGYMVDVNAILADLRPGALLCVRPSSE DPDWGGPGAVLNIGMNDARYVELSDTLGPAAAAALYLRFVQSYAVHVARLDPDVFEDVEDGGPDALSEMLQAYEAEAEEP FPQDPGEQLAAVLRSMARAWEGTSARLLRAAKGAPEDAGLGLIVQEMVPGLGQGECGSGVLQLVNSQTGLPQITGRYLSQ SQGRDALGVDAEAIYLEQDERGPSLEELAPEAFAELKAHAALMRRKLRAEMQVEFVIENGRVHILDGVRVPRSSRAAVRI AVRLAEDGIIPAEEALMRVDAYSLNELLHRQVDPNAKRDVIGSGIAASPGAATGRLVFTATEAQASKSRGEPCILARRET SPEDVRGMHAAAGVLTEKGGMTSHAAVIGRGLGLPCIVGASRLRFDSRRKQLTAPDGRVFKAGEIITVDGTSGEVLAGEP AMVEAAEDDALVTLMAWADAARDIAIRANADTPADAQTARNFNAEGIGLCRTEHMFFDPGRLTVMREMIFAETSSGRAAV LARLLPMQRKDFRELFRIMEGLPVCIRLFDPPLHEFLPTTTAGQRELSEALGLPVSDVTRRVAEMGEYNPMLGLRGVRLG VTVPEIYDMQARAIFEATLEASRDGAPVVPEIMIPLVSAKREVELVKARIDAVAAAVKSERGADFTYRLGVMVETPRAAL RADEIAAHTAFMSFGTNDLTQMTYGLSRDDAGRFMSAYVQQGVFPEDPFHVLDVDGVGELLQLGVQRGRMAKPEITLSIC GEHGGNPESIAFCREAGFDYVSCSPFRVPVARLAAAQLAIADKTGQIAPTYIKN >Mature_854_residues MDTTPKSTLITATAPIANQTHGGRAKCLQRLVRLELPVPQTVALSFDAVHEIAEGYMVDVNAILADLRPGALLCVRPSSE DPDWGGPGAVLNIGMNDARYVELSDTLGPAAAAALYLRFVQSYAVHVARLDPDVFEDVEDGGPDALSEMLQAYEAEAEEP FPQDPGEQLAAVLRSMARAWEGTSARLLRAAKGAPEDAGLGLIVQEMVPGLGQGECGSGVLQLVNSQTGLPQITGRYLSQ SQGRDALGVDAEAIYLEQDERGPSLEELAPEAFAELKAHAALMRRKLRAEMQVEFVIENGRVHILDGVRVPRSSRAAVRI AVRLAEDGIIPAEEALMRVDAYSLNELLHRQVDPNAKRDVIGSGIAASPGAATGRLVFTATEAQASKSRGEPCILARRET SPEDVRGMHAAAGVLTEKGGMTSHAAVIGRGLGLPCIVGASRLRFDSRRKQLTAPDGRVFKAGEIITVDGTSGEVLAGEP AMVEAAEDDALVTLMAWADAARDIAIRANADTPADAQTARNFNAEGIGLCRTEHMFFDPGRLTVMREMIFAETSSGRAAV LARLLPMQRKDFRELFRIMEGLPVCIRLFDPPLHEFLPTTTAGQRELSEALGLPVSDVTRRVAEMGEYNPMLGLRGVRLG VTVPEIYDMQARAIFEATLEASRDGAPVVPEIMIPLVSAKREVELVKARIDAVAAAVKSERGADFTYRLGVMVETPRAAL RADEIAAHTAFMSFGTNDLTQMTYGLSRDDAGRFMSAYVQQGVFPEDPFHVLDVDGVGELLQLGVQRGRMAKPEITLSIC GEHGGNPESIAFCREAGFDYVSCSPFRVPVARLAAAQLAIADKTGQIAPTYIKN
Specific function: Catalyzes the reversible phosphorylation of pyruvate and phosphate [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI1788756, Length=432, Percent_Identity=27.0833333333333, Blast_Score=105, Evalue=1e-23, Organism=Escherichia coli, GI1789193, Length=428, Percent_Identity=25, Blast_Score=97, Evalue=4e-21, Organism=Escherichia coli, GI48994992, Length=455, Percent_Identity=25.0549450549451, Blast_Score=95, Evalue=2e-20, Organism=Escherichia coli, GI1788726, Length=466, Percent_Identity=24.4635193133047, Blast_Score=83, Evalue=8e-17,
Paralogues:
None
Copy number: 360 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2659 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 4,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR010121 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.1 [H]
Molecular weight: Translated: 91717; Mature: 91717
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTTPKSTLITATAPIANQTHGGRAKCLQRLVRLELPVPQTVALSFDAVHEIAEGYMVDV CCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEECHHHHHHHHCCEEEEH NAILADLRPGALLCVRPSSEDPDWGGPGAVLNIGMNDARYVELSDTLGPAAAAALYLRFV HHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHH QSYAVHVARLDPDVFEDVEDGGPDALSEMLQAYEAEAEEPFPQDPGEQLAAVLRSMARAW HHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC EGTSARLLRAAKGAPEDAGLGLIVQEMVPGLGQGECGSGVLQLVNSQTGLPQITGRYLSQ CCCHHHHHHHHCCCCCCCCCCEEHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHH SQGRDALGVDAEAIYLEQDERGPSLEELAPEAFAELKAHAALMRRKLRAEMQVEFVIENG CCCCCCCCCCCEEEEEECCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHCEEEEEEEECC RVHILDGVRVPRSSRAAVRIAVRLAEDGIIPAEEALMRVDAYSLNELLHRQVDPNAKRDV CEEEEECCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH IGSGIAASPGAATGRLVFTATEAQASKSRGEPCILARRETSPEDVRGMHAAAGVLTEKGG HCCCCCCCCCCCCCEEEEEECHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCC MTSHAAVIGRGLGLPCIVGASRLRFDSRRKQLTAPDGRVFKAGEIITVDGTSGEVLAGEP CCHHHHHHHCCCCCHHHHCHHHHHHHHHHHCCCCCCCCEEECCCEEEEECCCCCEEECCC AMVEAAEDDALVTLMAWADAARDIAIRANADTPADAQTARNFNAEGIGLCRTEHMFFDPG CEEEECCCCCEEEEEEHHCCCCCEEEEECCCCCCCHHHHCCCCCCCCEEEEECCEEECCC RLTVMREMIFAETSSGRAAVLARLLPMQRKDFRELFRIMEGLPVCIRLFDPPLHEFLPTT HHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCC TAGQRELSEALGLPVSDVTRRVAEMGEYNPMLGLRGVRLGVTVPEIYDMQARAIFEATLE CCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHH ASRDGAPVVPEIMIPLVSAKREVELVKARIDAVAAAVKSERGADFTYRLGVMVETPRAAL CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCHHHH RADEIAAHTAFMSFGTNDLTQMTYGLSRDDAGRFMSAYVQQGVFPEDPFHVLDVDGVGEL HHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCHHHH LQLGVQRGRMAKPEITLSICGEHGGNPESIAFCREAGFDYVSCSPFRVPVARLAAAQLAI HHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHE ADKTGQIAPTYIKN ECCCCCCCCHHCCC >Mature Secondary Structure MDTTPKSTLITATAPIANQTHGGRAKCLQRLVRLELPVPQTVALSFDAVHEIAEGYMVDV CCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEECHHHHHHHHCCEEEEH NAILADLRPGALLCVRPSSEDPDWGGPGAVLNIGMNDARYVELSDTLGPAAAAALYLRFV HHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHH QSYAVHVARLDPDVFEDVEDGGPDALSEMLQAYEAEAEEPFPQDPGEQLAAVLRSMARAW HHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC EGTSARLLRAAKGAPEDAGLGLIVQEMVPGLGQGECGSGVLQLVNSQTGLPQITGRYLSQ CCCHHHHHHHHCCCCCCCCCCEEHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHH SQGRDALGVDAEAIYLEQDERGPSLEELAPEAFAELKAHAALMRRKLRAEMQVEFVIENG CCCCCCCCCCCEEEEEECCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHCEEEEEEEECC RVHILDGVRVPRSSRAAVRIAVRLAEDGIIPAEEALMRVDAYSLNELLHRQVDPNAKRDV CEEEEECCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH IGSGIAASPGAATGRLVFTATEAQASKSRGEPCILARRETSPEDVRGMHAAAGVLTEKGG HCCCCCCCCCCCCCEEEEEECHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCC MTSHAAVIGRGLGLPCIVGASRLRFDSRRKQLTAPDGRVFKAGEIITVDGTSGEVLAGEP CCHHHHHHHCCCCCHHHHCHHHHHHHHHHHCCCCCCCCEEECCCEEEEECCCCCEEECCC AMVEAAEDDALVTLMAWADAARDIAIRANADTPADAQTARNFNAEGIGLCRTEHMFFDPG CEEEECCCCCEEEEEEHHCCCCCEEEEECCCCCCCHHHHCCCCCCCCEEEEECCEEECCC RLTVMREMIFAETSSGRAAVLARLLPMQRKDFRELFRIMEGLPVCIRLFDPPLHEFLPTT HHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCC TAGQRELSEALGLPVSDVTRRVAEMGEYNPMLGLRGVRLGVTVPEIYDMQARAIFEATLE CCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHH ASRDGAPVVPEIMIPLVSAKREVELVKARIDAVAAAVKSERGADFTYRLGVMVETPRAAL CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCHHHH RADEIAAHTAFMSFGTNDLTQMTYGLSRDDAGRFMSAYVQQGVFPEDPFHVLDVDGVGEL HHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCHHHH LQLGVQRGRMAKPEITLSICGEHGGNPESIAFCREAGFDYVSCSPFRVPVARLAAAQLAI HHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHE ADKTGQIAPTYIKN ECCCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11481430; 9168612 [H]