Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082147

Identifier: 99082147

GI number: 99082147

Start: 2425794

End: 2426714

Strand: Reverse

Name: 99082147

Synonym: TM1040_2307

Alternate gene names: NA

Gene position: 2426714-2425794 (Counterclockwise)

Preceding gene: 99082148

Following gene: 99082146

Centisome position: 75.81

GC content: 61.78

Gene sequence:

>921_bases
ATGAGTTCTGACATCCATCTCGCCTTCGCGCATCCCTCCGAACGCTCTGCCGCGACGGCCCGTCCCGGCGCGCTGGACCG
GATTTCCCTGCGCGATCACATCGTCGAGGTGGAGATCGGGGCTTTTCAACAGGAACGCGGCACCACGCAGCGTGTATGTT
TCAACGTTGTGGTGGAAATCGCGCCACTGCCGGCGGATCTCGATGACGATGTGGATCGTATCCTGTCGTATGACAAGGTG
ACCGAGGCCATTGCCCACGAGCTGGCCCGCGAGCGGCTGGCGCTGCTGGAAACCCTGGCGGAGCGCGTGGCAGAGCGGAT
CCTCTGGGAGCCGCAGGCGGTGCGGGCCTTTGTGCGGATCGAGAAACTGGATCGTGGCCCGGGCAAGCTGGGGGTGGAGA
TCGTACGCTCTGCGGATCAGGTTTCGCACGAGGCCGATGAAGATGTGAAACCGCATCCACGACTGATGTTTCTCTCCAAC
GCTGCGATCGACAGCGACAATCTCACTGGTTGGATCGACCAGATGGAATGCCGCGAGCGGCCCTTGATCCTCTGTGTGGG
GGCGCATGATCTGGCGCTGCCCCAGACCGGGCACAAATGGACCCAGCGCCGCATTGATTTGCTGGCAATTGAGCAAAATG
CCTGGCGTCTGGCGGCGCGGGATTCGCGCTGCAAAGTGGTGGAAACCCGTACTGAGCTGGACTGGGCGATGAAAAATGGC
CAGATCTGCGTCTGGGCGCCCTCCAAGATCGTGCTGGATGCGGTCGAAGGTCCCAGCGAGCCGCCATCAAATGCGGTTGC
ACTTGCGGCGTGGTTCGCTTCTACTTTCGAAGCAGAAGAAATGATCGTGATTGGCGCGGAGCTGCCGGAGAACCCCGGCG
TGCCTCTGCGGGCCCATGCTGAGGAGCAACATACCCTGTGA

Upstream 100 bases:

>100_bases
GCACGGCGGGTCTGAGCCTGTTATCCGGCTGGAACGGACCTAAGACTGTGACTCCTGACACAGCCTTTTTCCTGTTCCAA
AGCCAGCCGGGGGCCACACC

Downstream 100 bases:

>100_bases
GTTACTACCGCCCCCTGGTTCGTCATGGAGATGCGCGCCCCGAGGGCGCCATTCATCTCGCCGGCAGCGCGCTCTGGTTC
ACTGAAGTCGAAGTTCTGGA

Product: dihydroneopterin aldolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MSSDIHLAFAHPSERSAATARPGALDRISLRDHIVEVEIGAFQQERGTTQRVCFNVVVEIAPLPADLDDDVDRILSYDKV
TEAIAHELARERLALLETLAERVAERILWEPQAVRAFVRIEKLDRGPGKLGVEIVRSADQVSHEADEDVKPHPRLMFLSN
AAIDSDNLTGWIDQMECRERPLILCVGAHDLALPQTGHKWTQRRIDLLAIEQNAWRLAARDSRCKVVETRTELDWAMKNG
QICVWAPSKIVLDAVEGPSEPPSNAVALAAWFASTFEAEEMIVIGAELPENPGVPLRAHAEEQHTL

Sequences:

>Translated_306_residues
MSSDIHLAFAHPSERSAATARPGALDRISLRDHIVEVEIGAFQQERGTTQRVCFNVVVEIAPLPADLDDDVDRILSYDKV
TEAIAHELARERLALLETLAERVAERILWEPQAVRAFVRIEKLDRGPGKLGVEIVRSADQVSHEADEDVKPHPRLMFLSN
AAIDSDNLTGWIDQMECRERPLILCVGAHDLALPQTGHKWTQRRIDLLAIEQNAWRLAARDSRCKVVETRTELDWAMKNG
QICVWAPSKIVLDAVEGPSEPPSNAVALAAWFASTFEAEEMIVIGAELPENPGVPLRAHAEEQHTL
>Mature_305_residues
SSDIHLAFAHPSERSAATARPGALDRISLRDHIVEVEIGAFQQERGTTQRVCFNVVVEIAPLPADLDDDVDRILSYDKVT
EAIAHELARERLALLETLAERVAERILWEPQAVRAFVRIEKLDRGPGKLGVEIVRSADQVSHEADEDVKPHPRLMFLSNA
AIDSDNLTGWIDQMECRERPLILCVGAHDLALPQTGHKWTQRRIDLLAIEQNAWRLAARDSRCKVVETRTELDWAMKNGQ
ICVWAPSKIVLDAVEGPSEPPSNAVALAAWFASTFEAEEMIVIGAELPENPGVPLRAHAEEQHTL

Specific function: Unknown

COG id: COG1539

COG function: function code H; Dihydroneopterin aldolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34095; Mature: 33964

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSDIHLAFAHPSERSAATARPGALDRISLRDHIVEVEIGAFQQERGTTQRVCFNVVVEI
CCCCEEEEEECCCCCCCCCCCCCCCCEEEHHHEEEEEEECCCHHHCCCHHHHHHHHHHHH
APLPADLDDDVDRILSYDKVTEAIAHELARERLALLETLAERVAERILWEPQAVRAFVRI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
EKLDRGPGKLGVEIVRSADQVSHEADEDVKPHPRLMFLSNAAIDSDNLTGWIDQMECRER
HHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCC
PLILCVGAHDLALPQTGHKWTQRRIDLLAIEQNAWRLAARDSRCKVVETRTELDWAMKNG
CEEEEECCCCCCCCCCCCHHHHHCEEEEEEECCCEEEECCCCCCEEEECHHHHHHHCCCC
QICVWAPSKIVLDAVEGPSEPPSNAVALAAWFASTFEAEEMIVIGAELPENPGVPLRAHA
CEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEECC
EEQHTL
CCCCCC
>Mature Secondary Structure 
SSDIHLAFAHPSERSAATARPGALDRISLRDHIVEVEIGAFQQERGTTQRVCFNVVVEI
CCCEEEEEECCCCCCCCCCCCCCCCEEEHHHEEEEEEECCCHHHCCCHHHHHHHHHHHH
APLPADLDDDVDRILSYDKVTEAIAHELARERLALLETLAERVAERILWEPQAVRAFVRI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
EKLDRGPGKLGVEIVRSADQVSHEADEDVKPHPRLMFLSNAAIDSDNLTGWIDQMECRER
HHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCC
PLILCVGAHDLALPQTGHKWTQRRIDLLAIEQNAWRLAARDSRCKVVETRTELDWAMKNG
CEEEEECCCCCCCCCCCCHHHHHCEEEEEEECCCEEEECCCCCCEEEECHHHHHHHCCCC
QICVWAPSKIVLDAVEGPSEPPSNAVALAAWFASTFEAEEMIVIGAELPENPGVPLRAHA
CEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEECC
EEQHTL
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA