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The map label for this gene is ydhC [H]

Identifier: 99082136

GI number: 99082136

Start: 2415802

End: 2416452

Strand: Reverse

Name: ydhC [H]

Synonym: TM1040_2296

Alternate gene names: 99082136

Gene position: 2416452-2415802 (Counterclockwise)

Preceding gene: 99082140

Following gene: 99082133

Centisome position: 75.49

GC content: 63.9

Gene sequence:

>651_bases
ATGAGCCAGACGAAGAGCAGCACCCAGAAAGACGCCTATGGGCTGATCCTCGATGCCATCGACGTGGGCATGTTCAAACC
CGGCGACCGCTTGGTCGAGAATGATCTGGCGGATCGTTTTGGGGTGTCGCGCACGCCCATTCGCGAGGCATTGCAGCGGC
TGGAAACCCAGAGCCTTCTGGAGCGTGATGGCCGGTCACTGATCGTGGCCTCGCTTGATCACAACCAGATGGCAGAGCTT
TATGTGGTGCGCCGCGAGCTGGAGGGGCTGGCGGCGGCGCTGGCGGCCCGCCATGCCACCGACGAAGAGGTGCAGGTTCT
GCGCGACATGGTCGAGGCCGACGATGCGCTGATCGACAACCCGGTCGAACTTGCCAAGGCGAACCGGCGGTTTCACCAGC
AGATCCATCTGGCCTCCCACAACCGCTATCTGGTGCAGCAACTGGATCTGGTGCATCGCTCCATGGCGCTGATGGCCACG
ACATCGCTGGCTGCCGAGGGGCGCGGGCGCATCGCGCAAGACGAGCATAAGGCGATTGTCGCGGCGATTGCCAACCGGGA
TGAGGCGGCGGCAGGGCAGGCGCTGAAGGATCATATCTCGGTGGCCTTCACCACGCGATTGAAACAGGACGCGGGCGCAC
GCGGCGGCTGA

Upstream 100 bases:

>100_bases
GGATTCGCAATGCAATAGCACGCGCGACCTTGGGGCTCAGGCTTGATTGCCCCGCAGGCAGGGCGTAGAACATTGTGGTG
CAATGGAGAGCGACACGCCG

Downstream 100 bases:

>100_bases
GGTCAATGCTCTGTGGTGCCGCCATGATCCCCATGCGCGGTCTTGTCCCAGAAAAACGGCGCTGCGAACACCTCCCAGAG
GGCTTTGTAGGCGGCAAAAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MSQTKSSTQKDAYGLILDAIDVGMFKPGDRLVENDLADRFGVSRTPIREALQRLETQSLLERDGRSLIVASLDHNQMAEL
YVVRRELEGLAAALAARHATDEEVQVLRDMVEADDALIDNPVELAKANRRFHQQIHLASHNRYLVQQLDLVHRSMALMAT
TSLAAEGRGRIAQDEHKAIVAAIANRDEAAAGQALKDHISVAFTTRLKQDAGARGG

Sequences:

>Translated_216_residues
MSQTKSSTQKDAYGLILDAIDVGMFKPGDRLVENDLADRFGVSRTPIREALQRLETQSLLERDGRSLIVASLDHNQMAEL
YVVRRELEGLAAALAARHATDEEVQVLRDMVEADDALIDNPVELAKANRRFHQQIHLASHNRYLVQQLDLVHRSMALMAT
TSLAAEGRGRIAQDEHKAIVAAIANRDEAAAGQALKDHISVAFTTRLKQDAGARGG
>Mature_215_residues
SQTKSSTQKDAYGLILDAIDVGMFKPGDRLVENDLADRFGVSRTPIREALQRLETQSLLERDGRSLIVASLDHNQMAELY
VVRRELEGLAAALAARHATDEEVQVLRDMVEADDALIDNPVELAKANRRFHQQIHLASHNRYLVQQLDLVHRSMALMATT
SLAAEGRGRIAQDEHKAIVAAIANRDEAAAGQALKDHISVAFTTRLKQDAGARGG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081914, Length=94, Percent_Identity=35.1063829787234, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 23769; Mature: 23638

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQTKSSTQKDAYGLILDAIDVGMFKPGDRLVENDLADRFGVSRTPIREALQRLETQSLL
CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
ERDGRSLIVASLDHNQMAELYVVRRELEGLAAALAARHATDEEVQVLRDMVEADDALIDN
HHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
PVELAKANRRFHQQIHLASHNRYLVQQLDLVHRSMALMATTSLAAEGRGRIAQDEHKAIV
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
AAIANRDEAAAGQALKDHISVAFTTRLKQDAGARGG
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SQTKSSTQKDAYGLILDAIDVGMFKPGDRLVENDLADRFGVSRTPIREALQRLETQSLL
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
ERDGRSLIVASLDHNQMAELYVVRRELEGLAAALAARHATDEEVQVLRDMVEADDALIDN
HHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
PVELAKANRRFHQQIHLASHNRYLVQQLDLVHRSMALMATTSLAAEGRGRIAQDEHKAIV
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
AAIANRDEAAAGQALKDHISVAFTTRLKQDAGARGG
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]