Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082120

Identifier: 99082120

GI number: 99082120

Start: 2397495

End: 2398535

Strand: Direct

Name: 99082120

Synonym: TM1040_2280

Alternate gene names: NA

Gene position: 2397495-2398535 (Clockwise)

Preceding gene: 99082119

Following gene: 99082122

Centisome position: 74.9

GC content: 59.17

Gene sequence:

>1041_bases
ATGGCCACGCTTCTCTATCTTGTTCACGGCGCGGCCGTGCAGCAGCAACAGCAGCTTTCCTACAGTGTATTGTCCGCGCT
CAAGCACGGTGTAGACGGTGTCGATCTGGTGTTGATCTGCGATGCGGCCAACCGCCGCCCCGACCTGCCCCTGCGCCATG
TTGTGATCTCGCCAGAGCAGATCGCGCAATGGACCGACGGCGGGCGCCGACCAGCGCGCGCGCAGCTTCATGCCCTGGAT
CTGGCCCTTCGGGAGACAGGCGGGCCGGTGTGCTGGGCCTCGACCGATAGCGCATTCACCGCTGCGCCAGCTCGGCTCTT
GGAGCGTATCACGCCAGAGACGCCTCTGTTTTTTGACCGGGACGGCTGGCTCACGTCTCGACCGGAATGGAGCCCCATTA
TTGACGCCTGCAAGGACTCTGCCCTCTCAGAACAGATCCAACCCAGCACAGAGGTCTTCGATACGGGCATTTTGGGGCTT
TCGCCCTCAGATTTGGATTTCATAAATCAATCATTGAGCCCCTCTTTTTGGCCCCGCATTCCCAATATTTTTGACAATTT
CGAACAAATCCACCTATGCGCGCTCCTTGCGCAAAACGCACAGGAATTGCGATTCTCTCACGACCTAGTGCAGCGGTATC
AGGGCTATATGCGACATGTCTACCAAGGGCGGCTGGAGGCAATGTTTCCACCCGGCGGGGCGGTGAACACCGCGCTGGCA
GCACAGTTGCCTGCTATAACAGAGCCGCCCAAACCCTTGCATTTGCGTCTAAAAGCCAAAGCCTATGCGCTCAGACGCGG
GCTTGGGCATGGGACGGAGTTTGGCTATCTCGCCTATCTCTGCGCCTTTGCGGCCCCGACCCCAGAGGGGCGCAATGTCT
GGGCCAATATCGCTCTGGACATGATGGAGCGCTCTGCCCGCGCGCCGCAAAAGCTGGTCAAGGACCTCTCGAAGCTTGCG
CCTGAGGCATTGCCTGATGCGGAGCTTTCACCACAAACCGAAGAAAGATGGCGCAGGTATTGGATGAACGCCGGGCTCTA
A

Upstream 100 bases:

>100_bases
CCGCGGCCTCTGAGGCGGATCAGAGCACGGATCCGGCCGCCGAGGAGACGCCTGACGCAGAGGCAGGCTCGGCTGGGGAC
GAAAGCAACTAAATCGCCCG

Downstream 100 bases:

>100_bases
ACTCTTTCGCCCGCGTCAAGTTTTGCGAGGAACGCGCTCGCTTCCTGCAAAATCACATCGCGTTTCTCTTCGTCCATCCG
GTCCCAGGTGCGATACATGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MATLLYLVHGAAVQQQQQLSYSVLSALKHGVDGVDLVLICDAANRRPDLPLRHVVISPEQIAQWTDGGRRPARAQLHALD
LALRETGGPVCWASTDSAFTAAPARLLERITPETPLFFDRDGWLTSRPEWSPIIDACKDSALSEQIQPSTEVFDTGILGL
SPSDLDFINQSLSPSFWPRIPNIFDNFEQIHLCALLAQNAQELRFSHDLVQRYQGYMRHVYQGRLEAMFPPGGAVNTALA
AQLPAITEPPKPLHLRLKAKAYALRRGLGHGTEFGYLAYLCAFAAPTPEGRNVWANIALDMMERSARAPQKLVKDLSKLA
PEALPDAELSPQTEERWRRYWMNAGL

Sequences:

>Translated_346_residues
MATLLYLVHGAAVQQQQQLSYSVLSALKHGVDGVDLVLICDAANRRPDLPLRHVVISPEQIAQWTDGGRRPARAQLHALD
LALRETGGPVCWASTDSAFTAAPARLLERITPETPLFFDRDGWLTSRPEWSPIIDACKDSALSEQIQPSTEVFDTGILGL
SPSDLDFINQSLSPSFWPRIPNIFDNFEQIHLCALLAQNAQELRFSHDLVQRYQGYMRHVYQGRLEAMFPPGGAVNTALA
AQLPAITEPPKPLHLRLKAKAYALRRGLGHGTEFGYLAYLCAFAAPTPEGRNVWANIALDMMERSARAPQKLVKDLSKLA
PEALPDAELSPQTEERWRRYWMNAGL
>Mature_345_residues
ATLLYLVHGAAVQQQQQLSYSVLSALKHGVDGVDLVLICDAANRRPDLPLRHVVISPEQIAQWTDGGRRPARAQLHALDL
ALRETGGPVCWASTDSAFTAAPARLLERITPETPLFFDRDGWLTSRPEWSPIIDACKDSALSEQIQPSTEVFDTGILGLS
PSDLDFINQSLSPSFWPRIPNIFDNFEQIHLCALLAQNAQELRFSHDLVQRYQGYMRHVYQGRLEAMFPPGGAVNTALAA
QLPAITEPPKPLHLRLKAKAYALRRGLGHGTEFGYLAYLCAFAAPTPEGRNVWANIALDMMERSARAPQKLVKDLSKLAP
EALPDAELSPQTEERWRRYWMNAGL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38480; Mature: 38349

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLLYLVHGAAVQQQQQLSYSVLSALKHGVDGVDLVLICDAANRRPDLPLRHVVISPEQ
CCHHHEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHEEEECHHH
IAQWTDGGRRPARAQLHALDLALRETGGPVCWASTDSAFTAAPARLLERITPETPLFFDR
HHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEECC
DGWLTSRPEWSPIIDACKDSALSEQIQPSTEVFDTGILGLSPSDLDFINQSLSPSFWPRI
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCC
PNIFDNFEQIHLCALLAQNAQELRFSHDLVQRYQGYMRHVYQGRLEAMFPPGGAVNTALA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCCCCHHHHHH
AQLPAITEPPKPLHLRLKAKAYALRRGLGHGTEFGYLAYLCAFAAPTPEGRNVWANIALD
HHCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH
MMERSARAPQKLVKDLSKLAPEALPDAELSPQTEERWRRYWMNAGL
HHHHHCCCHHHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
ATLLYLVHGAAVQQQQQLSYSVLSALKHGVDGVDLVLICDAANRRPDLPLRHVVISPEQ
CHHHEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHEEEECHHH
IAQWTDGGRRPARAQLHALDLALRETGGPVCWASTDSAFTAAPARLLERITPETPLFFDR
HHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEECC
DGWLTSRPEWSPIIDACKDSALSEQIQPSTEVFDTGILGLSPSDLDFINQSLSPSFWPRI
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCC
PNIFDNFEQIHLCALLAQNAQELRFSHDLVQRYQGYMRHVYQGRLEAMFPPGGAVNTALA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCCCCHHHHHH
AQLPAITEPPKPLHLRLKAKAYALRRGLGHGTEFGYLAYLCAFAAPTPEGRNVWANIALD
HHCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH
MMERSARAPQKLVKDLSKLAPEALPDAELSPQTEERWRRYWMNAGL
HHHHHCCCHHHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA