Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99082116

Identifier: 99082116

GI number: 99082116

Start: 2391780

End: 2392718

Strand: Direct

Name: 99082116

Synonym: TM1040_2276

Alternate gene names: NA

Gene position: 2391780-2392718 (Clockwise)

Preceding gene: 99082114

Following gene: 99082119

Centisome position: 74.72

GC content: 63.68

Gene sequence:

>939_bases
ATGACGTTGAAGCTATCTCGCCGCGCGGCTCTTGCCGGTGTTGCGGCTGCCCCGATCGCCGCGGCGGTTGCGGCCCCTGC
CCGCGCGGCCGGCCATGAAGCTGCCAAGGCGCCTCTGCATGCGCGTGCGTTCAAGGTGGGCGACTACACGGTTCACAGTC
TGCTGGCGGGCAGCACCGGTCGCGACGGTGTGAAGGATATCTTTGGCGGCGGAGCCTCTGATGAGGCGTTTTCCGAAGTC
GCGGCAGAGAATTTCATCTCTGACACCAGCGCTCAGTTTTACTTTACGCCGACACTCGTGGACACCGGCTCGGAGAAGAT
CCTCTTTGACACCGGCCTCAATGCAGGTGGGATCACAAAAGCGCTGGCGGATGCGGGCGTGACGCCGGAAGAAGTGGATG
TGGTGGTGCTGACCCATATGCATGGCGACCACATCGGCGGCATGACCGACGACAGCGGCGCGGCGACCTTTGCCAATGCG
CGCTATGTGACGGCAGCGGCGGAATATGACCACTGGACCGCAATGCCCGAAGGCAATGGCGGCGCGGATCGGGTGCGCGC
CAAGGTGGCACCGCAGGCCGAGAAGATGAGCTTTATCGACGATGGTGGGGCGGTGGCCTCGGGCGTGACCGGGATGGCAG
CCTTTGGGCATACGCCGGGCCATATGGTCTATATGATCGAGAGCGCCGGGCAGCAGCTGCTGCTGACGGCCGATCTGGCC
AATCACTATGTGTTCCCCTTTGCCCATCCCGAGTGGCAGACCAGCTTTGACACCGACAAGGATGCGGCCTCGGCCACGCG
GCGGCGGGTGCTGGAAATGCTCGCTGACAGCCGCACGCCAATGATCGGCTATCACATGCCCTTCCCTGCCGCCGGCTATG
TCGAGCGGCGCGGCGAAGGGTTCCGTTTTGTGCCGGTCAGCTATCAGATGATGGGCTAA

Upstream 100 bases:

>100_bases
GGGTCGGAGACCCTGCACGCATTCGTGATCTAAGTTACACGGATTTCGAGCGCGGGCGCTCTAGTTTCACCACCTATCAA
ACAACTGGGAGACTGACATC

Downstream 100 bases:

>100_bases
GCGCCAAAACGACTGAGGCGGAAGGGGCGCGGATCCACGATGGGCGCGTCCCCCGTCACCAGATCCGCCGTCAACCGACC
GGCCCCGGGGCCAAGGCCAA

Product: twin-arginine translocation pathway signal

Products: NA

Alternate protein names: Beta-Lactamase Domain Protein; Metallo-Beta-Lactamase Family Protein; Metallo-Beta-Lactamase Superfamily Protein; Beta-Lactamase-Like; Twin-Arginine Translocation Pathway Signal; Zn-Dependent Hydrolase; Beta-Lactamase-Like Protein; Beta-Lactamase; Metallo-Beta-Lactamase; Metal Dependent Hydrolase; Methyl Parathion Hydrolase; Metallo-Beta-Lactamase Superfamily; Beta-Lactamase Family Protein; Hydrolase; Beta-Lactamase Superfamily Hydrolase; Metallo-Hydrolase Protein; Glyoxalase II; Zn-Dependent Beta-Lactamase Domain Hydrolase; Beta-Lactamase/Hydrolase; Metal-Dependent Hydrolase; Organophosphate Pesticide Hydrolase; Signal Peptide; Beta-Lactamase-Like Zn-Dependent Hydrolase Protein; Metallo-Beta-Lactamase Domain-Containing Protein; GloB Protein; Aldehyde Dehydrogenase; Metallo-Beta-Lactamase Family Methyl Parathion Hydrolase; Signal Peptide Protein; Metall Dependent Hydrolase; Zn-Dependent Hydrolase Including Glyoxylase

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MTLKLSRRAALAGVAAAPIAAAVAAPARAAGHEAAKAPLHARAFKVGDYTVHSLLAGSTGRDGVKDIFGGGASDEAFSEV
AAENFISDTSAQFYFTPTLVDTGSEKILFDTGLNAGGITKALADAGVTPEEVDVVVLTHMHGDHIGGMTDDSGAATFANA
RYVTAAAEYDHWTAMPEGNGGADRVRAKVAPQAEKMSFIDDGGAVASGVTGMAAFGHTPGHMVYMIESAGQQLLLTADLA
NHYVFPFAHPEWQTSFDTDKDAASATRRRVLEMLADSRTPMIGYHMPFPAAGYVERRGEGFRFVPVSYQMMG

Sequences:

>Translated_312_residues
MTLKLSRRAALAGVAAAPIAAAVAAPARAAGHEAAKAPLHARAFKVGDYTVHSLLAGSTGRDGVKDIFGGGASDEAFSEV
AAENFISDTSAQFYFTPTLVDTGSEKILFDTGLNAGGITKALADAGVTPEEVDVVVLTHMHGDHIGGMTDDSGAATFANA
RYVTAAAEYDHWTAMPEGNGGADRVRAKVAPQAEKMSFIDDGGAVASGVTGMAAFGHTPGHMVYMIESAGQQLLLTADLA
NHYVFPFAHPEWQTSFDTDKDAASATRRRVLEMLADSRTPMIGYHMPFPAAGYVERRGEGFRFVPVSYQMMG
>Mature_311_residues
TLKLSRRAALAGVAAAPIAAAVAAPARAAGHEAAKAPLHARAFKVGDYTVHSLLAGSTGRDGVKDIFGGGASDEAFSEVA
AENFISDTSAQFYFTPTLVDTGSEKILFDTGLNAGGITKALADAGVTPEEVDVVVLTHMHGDHIGGMTDDSGAATFANAR
YVTAAAEYDHWTAMPEGNGGADRVRAKVAPQAEKMSFIDDGGAVASGVTGMAAFGHTPGHMVYMIESAGQQLLLTADLAN
HYVFPFAHPEWQTSFDTDKDAASATRRRVLEMLADSRTPMIGYHMPFPAAGYVERRGEGFRFVPVSYQMMG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32746; Mature: 32615

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLKLSRRAALAGVAAAPIAAAVAAPARAAGHEAAKAPLHARAFKVGDYTVHSLLAGSTG
CEEECCCHHHHHHHHHHHHHHHHHCCHHHCCCHHHCCCCHHEEEEECCHHHHHHHCCCCC
RDGVKDIFGGGASDEAFSEVAAENFISDTSAQFYFTPTLVDTGSEKILFDTGLNAGGITK
CCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEECCCCCCCHHH
ALADAGVTPEEVDVVVLTHMHGDHIGGMTDDSGAATFANARYVTAAAEYDHWTAMPEGNG
HHHHCCCCHHHEEEEEEEEECCCCCCCCCCCCCCEEECCCEEEEEEECCCCEECCCCCCC
GADRVRAKVAPQAEKMSFIDDGGAVASGVTGMAAFGHTPGHMVYMIESAGQQLLLTADLA
CHHHHEEECCCCHHHHEEECCCCCHHHCCHHHHHHCCCCCEEEEEEECCCCEEEEEEECC
NHYVFPFAHPEWQTSFDTDKDAASATRRRVLEMLADSRTPMIGYHMPFPAAGYVERRGEG
CCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHCCCC
FRFVPVSYQMMG
EEEEEEEEEECC
>Mature Secondary Structure 
TLKLSRRAALAGVAAAPIAAAVAAPARAAGHEAAKAPLHARAFKVGDYTVHSLLAGSTG
EEECCCHHHHHHHHHHHHHHHHHCCHHHCCCHHHCCCCHHEEEEECCHHHHHHHCCCCC
RDGVKDIFGGGASDEAFSEVAAENFISDTSAQFYFTPTLVDTGSEKILFDTGLNAGGITK
CCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEECCCCCCCHHH
ALADAGVTPEEVDVVVLTHMHGDHIGGMTDDSGAATFANARYVTAAAEYDHWTAMPEGNG
HHHHCCCCHHHEEEEEEEEECCCCCCCCCCCCCCEEECCCEEEEEEECCCCEECCCCCCC
GADRVRAKVAPQAEKMSFIDDGGAVASGVTGMAAFGHTPGHMVYMIESAGQQLLLTADLA
CHHHHEEECCCCHHHHEEECCCCCHHHCCHHHHHHCCCCCEEEEEEECCCCEEEEEEECC
NHYVFPFAHPEWQTSFDTDKDAASATRRRVLEMLADSRTPMIGYHMPFPAAGYVERRGEG
CCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHCCCC
FRFVPVSYQMMG
EEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA