Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99082108

Identifier: 99082108

GI number: 99082108

Start: 2382783

End: 2383712

Strand: Reverse

Name: 99082108

Synonym: TM1040_2268

Alternate gene names: NA

Gene position: 2383712-2382783 (Counterclockwise)

Preceding gene: 99082109

Following gene: 99082107

Centisome position: 74.47

GC content: 64.73

Gene sequence:

>930_bases
ATGACCATTACCCATCTTGTGACCCATTCTGGTGGCTTTCACGCGGATGAGCTCCTCTCCACCGTCATCCTGAGCCGCCT
CTATCCCCATGCCGAACTGGTGCGCACGCGGGACAAGGCATGGATTACCCCCGCCGAGGGGCGGATCATCTATGACGTGG
GCGGGCAGTTTGATGCTGCCGCGCGGATCTTTGACCATCACCAGCGGCCCAACCCGCTGCGCCCCGATGGCCAGCCCTAC
AGCTCCTTTGGTCTGATCTGGGCCGCATTTGGCCAGGACTACCTGCGCGCGCTGGAGGTTCCGGAGAAAGATCTCGACCG
GGTTCACGCCGCGTTTGATGCGGATTTTGTGCGTCCTGTCGATCTCTTGGACAATGGCGCGGTCGACAGTGCCGAGGCCG
GGCCGCTGTTTGCAGGGCTGACGCTGCCGGTGCTTCTTGAGAGTTTGAAGCCGGTGTTTGATGATCGCCGGGATGGTGCT
GACGATGCGGCATTTGTCGACGCGCTGGCCATCGCGCGCGCCTTTGTCGAAGCCCGGCTGCGCCACAAGGCGGCCAAATT
GCGGGCCACGGATGTGGTGCTGCGCGCCATTGAGGACGCGGGCGAGCGCCGTGTGCTCGAGCTCCCGATGGGCATGCCCT
TTCGGGGCGCGGTGGAGCAGGCCGGAGCCGATCATCTGCTGTTTGTGATCCATCCGCGCGACAGCGACTGGGCGCTGACC
ACGATCCGCACGGGCGATGATACCTTTGAAACCCGCGCCGATCTGCCCTTGGCTTGGGCGGGTCTGACGGATGCGGCTTT
TGAGGCGGCGTCCGGCGTGCCCGGTGCTGCCTTCTGCCACAATGGCCGGTTCCTGGCGATCGCCCGTAGCCGTGAGGCGG
TTCTGGCTCTGGCGGAGCTGGCAGTGGCAGAGGTCTGTGCCACTGCCTGA

Upstream 100 bases:

>100_bases
GTGGCGCTTGACCTCGCGCATGGGATTGCCCATGGCACCCTAAAGCGGCCTGCAGGCCGTCCACTATCCCCTATGGCCCA
CGTTACCCCAAGGCACGTCC

Downstream 100 bases:

>100_bases
TCGGCAGGCCTGAAAGACAGATCCGAGCGACAGACCCGCGGCTTTAAAAGGCCGTCTGCATGGGTCATGGGGCCTTGTTA
TCGCATAACAGCTGCCTCCC

Product: metal-dependent protein hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MTITHLVTHSGGFHADELLSTVILSRLYPHAELVRTRDKAWITPAEGRIIYDVGGQFDAAARIFDHHQRPNPLRPDGQPY
SSFGLIWAAFGQDYLRALEVPEKDLDRVHAAFDADFVRPVDLLDNGAVDSAEAGPLFAGLTLPVLLESLKPVFDDRRDGA
DDAAFVDALAIARAFVEARLRHKAAKLRATDVVLRAIEDAGERRVLELPMGMPFRGAVEQAGADHLLFVIHPRDSDWALT
TIRTGDDTFETRADLPLAWAGLTDAAFEAASGVPGAAFCHNGRFLAIARSREAVLALAELAVAEVCATA

Sequences:

>Translated_309_residues
MTITHLVTHSGGFHADELLSTVILSRLYPHAELVRTRDKAWITPAEGRIIYDVGGQFDAAARIFDHHQRPNPLRPDGQPY
SSFGLIWAAFGQDYLRALEVPEKDLDRVHAAFDADFVRPVDLLDNGAVDSAEAGPLFAGLTLPVLLESLKPVFDDRRDGA
DDAAFVDALAIARAFVEARLRHKAAKLRATDVVLRAIEDAGERRVLELPMGMPFRGAVEQAGADHLLFVIHPRDSDWALT
TIRTGDDTFETRADLPLAWAGLTDAAFEAASGVPGAAFCHNGRFLAIARSREAVLALAELAVAEVCATA
>Mature_308_residues
TITHLVTHSGGFHADELLSTVILSRLYPHAELVRTRDKAWITPAEGRIIYDVGGQFDAAARIFDHHQRPNPLRPDGQPYS
SFGLIWAAFGQDYLRALEVPEKDLDRVHAAFDADFVRPVDLLDNGAVDSAEAGPLFAGLTLPVLLESLKPVFDDRRDGAD
DAAFVDALAIARAFVEARLRHKAAKLRATDVVLRAIEDAGERRVLELPMGMPFRGAVEQAGADHLLFVIHPRDSDWALTT
IRTGDDTFETRADLPLAWAGLTDAAFEAASGVPGAAFCHNGRFLAIARSREAVLALAELAVAEVCATA

Specific function: Unknown

COG id: COG4286

COG function: function code S; Uncharacterized conserved protein related to MYG1 family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0160 (MYG1) family [H]

Homologues:

Organism=Homo sapiens, GI145275185, Length=332, Percent_Identity=30.1204819277108, Blast_Score=108, Evalue=9e-24,
Organism=Caenorhabditis elegans, GI25150283, Length=329, Percent_Identity=27.9635258358663, Blast_Score=95, Evalue=5e-20,
Organism=Saccharomyces cerevisiae, GI6321004, Length=332, Percent_Identity=29.8192771084337, Blast_Score=115, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24645226, Length=323, Percent_Identity=26.0061919504644, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI45551849, Length=323, Percent_Identity=26.0061919504644, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24645224, Length=323, Percent_Identity=26.0061919504644, Blast_Score=93, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003226 [H]

Pfam domain/function: PF03690 UPF0160 [H]

EC number: NA

Molecular weight: Translated: 33578; Mature: 33447

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTITHLVTHSGGFHADELLSTVILSRLYPHAELVRTRDKAWITPAEGRIIYDVGGQFDAA
CEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCEECCCCCEEEEECCCCHHHH
ARIFDHHQRPNPLRPDGQPYSSFGLIWAAFGQDYLRALEVPEKDLDRVHAAFDADFVRPV
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHH
DLLDNGAVDSAEAGPLFAGLTLPVLLESLKPVFDDRRDGADDAAFVDALAIARAFVEARL
HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
RHKAAKLRATDVVLRAIEDAGERRVLELPMGMPFRGAVEQAGADHLLFVIHPRDSDWALT
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHCCCCEEEEEEECCCCCEEEE
TIRTGDDTFETRADLPLAWAGLTDAAFEAASGVPGAAFCHNGRFLAIARSREAVLALAEL
EEECCCCCHHHCCCCCEEECCCCHHHHHHHCCCCCHHEEECCEEEEEECCCHHHHHHHHH
AVAEVCATA
HHHHHHHCC
>Mature Secondary Structure 
TITHLVTHSGGFHADELLSTVILSRLYPHAELVRTRDKAWITPAEGRIIYDVGGQFDAA
EEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCEECCCCCEEEEECCCCHHHH
ARIFDHHQRPNPLRPDGQPYSSFGLIWAAFGQDYLRALEVPEKDLDRVHAAFDADFVRPV
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHH
DLLDNGAVDSAEAGPLFAGLTLPVLLESLKPVFDDRRDGADDAAFVDALAIARAFVEARL
HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
RHKAAKLRATDVVLRAIEDAGERRVLELPMGMPFRGAVEQAGADHLLFVIHPRDSDWALT
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHCCCCEEEEEEECCCCCEEEE
TIRTGDDTFETRADLPLAWAGLTDAAFEAASGVPGAAFCHNGRFLAIARSREAVLALAEL
EEECCCCCHHHCCCCCEEECCCCHHHHHHHCCCCCHHEEECCEEEEEECCCHHHHHHHHH
AVAEVCATA
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362 [H]