| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082108
Identifier: 99082108
GI number: 99082108
Start: 2382783
End: 2383712
Strand: Reverse
Name: 99082108
Synonym: TM1040_2268
Alternate gene names: NA
Gene position: 2383712-2382783 (Counterclockwise)
Preceding gene: 99082109
Following gene: 99082107
Centisome position: 74.47
GC content: 64.73
Gene sequence:
>930_bases ATGACCATTACCCATCTTGTGACCCATTCTGGTGGCTTTCACGCGGATGAGCTCCTCTCCACCGTCATCCTGAGCCGCCT CTATCCCCATGCCGAACTGGTGCGCACGCGGGACAAGGCATGGATTACCCCCGCCGAGGGGCGGATCATCTATGACGTGG GCGGGCAGTTTGATGCTGCCGCGCGGATCTTTGACCATCACCAGCGGCCCAACCCGCTGCGCCCCGATGGCCAGCCCTAC AGCTCCTTTGGTCTGATCTGGGCCGCATTTGGCCAGGACTACCTGCGCGCGCTGGAGGTTCCGGAGAAAGATCTCGACCG GGTTCACGCCGCGTTTGATGCGGATTTTGTGCGTCCTGTCGATCTCTTGGACAATGGCGCGGTCGACAGTGCCGAGGCCG GGCCGCTGTTTGCAGGGCTGACGCTGCCGGTGCTTCTTGAGAGTTTGAAGCCGGTGTTTGATGATCGCCGGGATGGTGCT GACGATGCGGCATTTGTCGACGCGCTGGCCATCGCGCGCGCCTTTGTCGAAGCCCGGCTGCGCCACAAGGCGGCCAAATT GCGGGCCACGGATGTGGTGCTGCGCGCCATTGAGGACGCGGGCGAGCGCCGTGTGCTCGAGCTCCCGATGGGCATGCCCT TTCGGGGCGCGGTGGAGCAGGCCGGAGCCGATCATCTGCTGTTTGTGATCCATCCGCGCGACAGCGACTGGGCGCTGACC ACGATCCGCACGGGCGATGATACCTTTGAAACCCGCGCCGATCTGCCCTTGGCTTGGGCGGGTCTGACGGATGCGGCTTT TGAGGCGGCGTCCGGCGTGCCCGGTGCTGCCTTCTGCCACAATGGCCGGTTCCTGGCGATCGCCCGTAGCCGTGAGGCGG TTCTGGCTCTGGCGGAGCTGGCAGTGGCAGAGGTCTGTGCCACTGCCTGA
Upstream 100 bases:
>100_bases GTGGCGCTTGACCTCGCGCATGGGATTGCCCATGGCACCCTAAAGCGGCCTGCAGGCCGTCCACTATCCCCTATGGCCCA CGTTACCCCAAGGCACGTCC
Downstream 100 bases:
>100_bases TCGGCAGGCCTGAAAGACAGATCCGAGCGACAGACCCGCGGCTTTAAAAGGCCGTCTGCATGGGTCATGGGGCCTTGTTA TCGCATAACAGCTGCCTCCC
Product: metal-dependent protein hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 309; Mature: 308
Protein sequence:
>309_residues MTITHLVTHSGGFHADELLSTVILSRLYPHAELVRTRDKAWITPAEGRIIYDVGGQFDAAARIFDHHQRPNPLRPDGQPY SSFGLIWAAFGQDYLRALEVPEKDLDRVHAAFDADFVRPVDLLDNGAVDSAEAGPLFAGLTLPVLLESLKPVFDDRRDGA DDAAFVDALAIARAFVEARLRHKAAKLRATDVVLRAIEDAGERRVLELPMGMPFRGAVEQAGADHLLFVIHPRDSDWALT TIRTGDDTFETRADLPLAWAGLTDAAFEAASGVPGAAFCHNGRFLAIARSREAVLALAELAVAEVCATA
Sequences:
>Translated_309_residues MTITHLVTHSGGFHADELLSTVILSRLYPHAELVRTRDKAWITPAEGRIIYDVGGQFDAAARIFDHHQRPNPLRPDGQPY SSFGLIWAAFGQDYLRALEVPEKDLDRVHAAFDADFVRPVDLLDNGAVDSAEAGPLFAGLTLPVLLESLKPVFDDRRDGA DDAAFVDALAIARAFVEARLRHKAAKLRATDVVLRAIEDAGERRVLELPMGMPFRGAVEQAGADHLLFVIHPRDSDWALT TIRTGDDTFETRADLPLAWAGLTDAAFEAASGVPGAAFCHNGRFLAIARSREAVLALAELAVAEVCATA >Mature_308_residues TITHLVTHSGGFHADELLSTVILSRLYPHAELVRTRDKAWITPAEGRIIYDVGGQFDAAARIFDHHQRPNPLRPDGQPYS SFGLIWAAFGQDYLRALEVPEKDLDRVHAAFDADFVRPVDLLDNGAVDSAEAGPLFAGLTLPVLLESLKPVFDDRRDGAD DAAFVDALAIARAFVEARLRHKAAKLRATDVVLRAIEDAGERRVLELPMGMPFRGAVEQAGADHLLFVIHPRDSDWALTT IRTGDDTFETRADLPLAWAGLTDAAFEAASGVPGAAFCHNGRFLAIARSREAVLALAELAVAEVCATA
Specific function: Unknown
COG id: COG4286
COG function: function code S; Uncharacterized conserved protein related to MYG1 family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0160 (MYG1) family [H]
Homologues:
Organism=Homo sapiens, GI145275185, Length=332, Percent_Identity=30.1204819277108, Blast_Score=108, Evalue=9e-24, Organism=Caenorhabditis elegans, GI25150283, Length=329, Percent_Identity=27.9635258358663, Blast_Score=95, Evalue=5e-20, Organism=Saccharomyces cerevisiae, GI6321004, Length=332, Percent_Identity=29.8192771084337, Blast_Score=115, Evalue=1e-26, Organism=Drosophila melanogaster, GI24645226, Length=323, Percent_Identity=26.0061919504644, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI45551849, Length=323, Percent_Identity=26.0061919504644, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI24645224, Length=323, Percent_Identity=26.0061919504644, Blast_Score=93, Evalue=2e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003226 [H]
Pfam domain/function: PF03690 UPF0160 [H]
EC number: NA
Molecular weight: Translated: 33578; Mature: 33447
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTITHLVTHSGGFHADELLSTVILSRLYPHAELVRTRDKAWITPAEGRIIYDVGGQFDAA CEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCEECCCCCEEEEECCCCHHHH ARIFDHHQRPNPLRPDGQPYSSFGLIWAAFGQDYLRALEVPEKDLDRVHAAFDADFVRPV HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHH DLLDNGAVDSAEAGPLFAGLTLPVLLESLKPVFDDRRDGADDAAFVDALAIARAFVEARL HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH RHKAAKLRATDVVLRAIEDAGERRVLELPMGMPFRGAVEQAGADHLLFVIHPRDSDWALT HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHCCCCEEEEEEECCCCCEEEE TIRTGDDTFETRADLPLAWAGLTDAAFEAASGVPGAAFCHNGRFLAIARSREAVLALAEL EEECCCCCHHHCCCCCEEECCCCHHHHHHHCCCCCHHEEECCEEEEEECCCHHHHHHHHH AVAEVCATA HHHHHHHCC >Mature Secondary Structure TITHLVTHSGGFHADELLSTVILSRLYPHAELVRTRDKAWITPAEGRIIYDVGGQFDAA EEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCEECCCCCEEEEECCCCHHHH ARIFDHHQRPNPLRPDGQPYSSFGLIWAAFGQDYLRALEVPEKDLDRVHAAFDADFVRPV HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHH DLLDNGAVDSAEAGPLFAGLTLPVLLESLKPVFDDRRDGADDAAFVDALAIARAFVEARL HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH RHKAAKLRATDVVLRAIEDAGERRVLELPMGMPFRGAVEQAGADHLLFVIHPRDSDWALT HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHCCCCEEEEEEECCCCCEEEE TIRTGDDTFETRADLPLAWAGLTDAAFEAASGVPGAAFCHNGRFLAIARSREAVLALAEL EEECCCCCHHHCCCCCEEECCCCHHHHHHHCCCCCHHEEECCEEEEEECCCHHHHHHHHH AVAEVCATA HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10192388; 10684935; 10871362 [H]