Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081960

Identifier: 99081960

GI number: 99081960

Start: 2225676

End: 2226056

Strand: Direct

Name: 99081960

Synonym: TM1040_2120

Alternate gene names: NA

Gene position: 2225676-2226056 (Clockwise)

Preceding gene: 99081959

Following gene: 99081961

Centisome position: 69.53

GC content: 59.32

Gene sequence:

>381_bases
ATGGAGCCCGGAGGATCCCTGTTCTGCGCTGCAAAACACCTGCGCCAGCGGGATGGTGATTCCCTTGTTTTGGGCCGTGT
CGCGCTCTGGATTTATGCTGCTGCGCTCAAATGCACCGATGAGGCGGACATCTTGCATTTTAGAGGGTTGCAGGCTAGCA
CGTTGGCTCACCGCGACCCGAAGGAGCTCGACATGGGGATCAACACCGAACGTGACATTGAGGCGAACATGCAGATCGGC
CCTACTGATGTCGGGATGGTCCGCATCTTTATCGAAGCCGATGGGCTAGAGATCCCGATGGACTTCGATCCCGAAGAAGC
CGAGGAAATCGCTGACGAAATCCGCGCAGCCGCGCAGGCCGCCCGCGCCGTCAGCTCCTGA

Upstream 100 bases:

>100_bases
CAAGAGCCCATGTCACAAGTTTTTTGCACTTTTTTGCGCGGCGGCAAATTCTTGTGGATTTCTCCAAGCACCACTTGGCG
GTCACGCAGGCACTACTTCG

Downstream 100 bases:

>100_bases
TCCCTCGCACACAGCCGACGAGATCGCCGGGCCTTGCGCCCGGCTTTTCTGTGTCACGGTAACCGCCTTCTTGCCGCGCC
CATCTCACTCTTGCCCATAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MEPGGSLFCAAKHLRQRDGDSLVLGRVALWIYAAALKCTDEADILHFRGLQASTLAHRDPKELDMGINTERDIEANMQIG
PTDVGMVRIFIEADGLEIPMDFDPEEAEEIADEIRAAAQAARAVSS

Sequences:

>Translated_126_residues
MEPGGSLFCAAKHLRQRDGDSLVLGRVALWIYAAALKCTDEADILHFRGLQASTLAHRDPKELDMGINTERDIEANMQIG
PTDVGMVRIFIEADGLEIPMDFDPEEAEEIADEIRAAAQAARAVSS
>Mature_126_residues
MEPGGSLFCAAKHLRQRDGDSLVLGRVALWIYAAALKCTDEADILHFRGLQASTLAHRDPKELDMGINTERDIEANMQIG
PTDVGMVRIFIEADGLEIPMDFDPEEAEEIADEIRAAAQAARAVSS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13753; Mature: 13753

Theoretical pI: Translated: 4.24; Mature: 4.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPGGSLFCAAKHLRQRDGDSLVLGRVALWIYAAALKCTDEADILHFRGLQASTLAHRDP
CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHCCCCH
KELDMGINTERDIEANMQIGPTDVGMVRIFIEADGLEIPMDFDPEEAEEIADEIRAAAQA
HHHCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCEECCCCCCHHHHHHHHHHHHHHHHH
ARAVSS
HHHHCC
>Mature Secondary Structure
MEPGGSLFCAAKHLRQRDGDSLVLGRVALWIYAAALKCTDEADILHFRGLQASTLAHRDP
CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHCCCCH
KELDMGINTERDIEANMQIGPTDVGMVRIFIEADGLEIPMDFDPEEAEEIADEIRAAAQA
HHHCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCEECCCCCCHHHHHHHHHHHHHHHHH
ARAVSS
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA