Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is tyrC [H]

Identifier: 99081940

GI number: 99081940

Start: 2205924

End: 2206856

Strand: Reverse

Name: tyrC [H]

Synonym: TM1040_2100

Alternate gene names: 99081940

Gene position: 2206856-2205924 (Counterclockwise)

Preceding gene: 99081941

Following gene: 99081939

Centisome position: 68.94

GC content: 64.84

Gene sequence:

>933_bases
ATGAGCGAGATCACCGCCAAGCCCGTCTACAACCGCGTGGCGCTGATCGGTCTTGGGCTGATTGCCTCGTCGATGTTCTG
GGCCATCAAACGCGCAGGCCTTGCAGGCGAAGTCACCGGCTACGCCCGCAGCGCGGAGACCCGAGACACCGCGCGTCGGA
TTGGTCTGTGTGATCGGGTCTGCGACACGGCAAGCGCAGCGGTGGAGGGCGCGGACCTCGTGGTGCTCTGTGTGCCCGTG
GGGGCGATGGGGGCCGTGGCCGCCGAGATTGCCCCGGCGCTGATGCCGGGAGCGACCGTTTCGGATGTGGGATCGGTCAA
GCGCCATGTGATCGAGGATGTGGCACCCCATATCCCCGAAGGCGTGCATTTTGTGCCCTCCCACCCGCTTGCGGGCACCG
AGCATTCCGGTCCCGAGTCGGGCTTTGCCGAGTTGTTCGATAACCGCTGGTGCCTTCTGGTGCCAGTGGACGGCAGCGCG
CCAGAGGCCGTTGCGCGGCTGCGCGCACTCTGGGAAGGCATGGGCGCGCATGTGGACGAGATGGACGCCGACCACCACGA
TCTGGTGCTTGCGGTGACAAGCCACACGCCGCATCTCATCGCCTACACGATGGTAGGGGTGGCGGATGACCTGCGCCGCG
TCACCGACAGCGAAGTGATCAAATACTCGGCTGCGGGGTTTCGGGACTTCACCCGGATTGCGGCCTCGGACCCGACCATG
TGGCGTGATGTGTTCCTGACCAACAAGGATGCCACGCTCGAAATTCTTGGCCGCTTCACCGAAGAGCTTTTTGCGCTGCA
ACGCGCGATCCGGACCGGGGATGGTCAGCATCTGCATGACTATTTCACGCGCACCCGCTCGATCCGGCGCGGCATTATCG
AAGCGGGTCAGGACACCGCGGCACCCGACTTCGGTCGCGGGGCGAAAAAGTGA

Upstream 100 bases:

>100_bases
GCTACAACCTGCCCACCGCGCTGCGGATCACCATCGGGGATGAGACCGCCTGTCGTGCGGTGGCCGCAGCGGTGAAGGAC
TTTAAGGCCGGGGCGGCAGA

Downstream 100 bases:

>100_bases
TCGCGTGGGCGCGGCATACGCTGGCCGGGCTGGCCCTGGCCTGTGTCGCGTTCACGGGTATGCCTGTTGTGGCTGCCCCG
GAAACGACGCTGCGTCCCCC

Product: cyclohexadienyl dehydrogenase

Products: NA

Alternate protein names: Arogenate dehydrogenase; ADH; Cyclohexadienyl dehydrogenase; Prephenate dehydrogenase; PDH [H]

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MSEITAKPVYNRVALIGLGLIASSMFWAIKRAGLAGEVTGYARSAETRDTARRIGLCDRVCDTASAAVEGADLVVLCVPV
GAMGAVAAEIAPALMPGATVSDVGSVKRHVIEDVAPHIPEGVHFVPSHPLAGTEHSGPESGFAELFDNRWCLLVPVDGSA
PEAVARLRALWEGMGAHVDEMDADHHDLVLAVTSHTPHLIAYTMVGVADDLRRVTDSEVIKYSAAGFRDFTRIAASDPTM
WRDVFLTNKDATLEILGRFTEELFALQRAIRTGDGQHLHDYFTRTRSIRRGIIEAGQDTAAPDFGRGAKK

Sequences:

>Translated_310_residues
MSEITAKPVYNRVALIGLGLIASSMFWAIKRAGLAGEVTGYARSAETRDTARRIGLCDRVCDTASAAVEGADLVVLCVPV
GAMGAVAAEIAPALMPGATVSDVGSVKRHVIEDVAPHIPEGVHFVPSHPLAGTEHSGPESGFAELFDNRWCLLVPVDGSA
PEAVARLRALWEGMGAHVDEMDADHHDLVLAVTSHTPHLIAYTMVGVADDLRRVTDSEVIKYSAAGFRDFTRIAASDPTM
WRDVFLTNKDATLEILGRFTEELFALQRAIRTGDGQHLHDYFTRTRSIRRGIIEAGQDTAAPDFGRGAKK
>Mature_309_residues
SEITAKPVYNRVALIGLGLIASSMFWAIKRAGLAGEVTGYARSAETRDTARRIGLCDRVCDTASAAVEGADLVVLCVPVG
AMGAVAAEIAPALMPGATVSDVGSVKRHVIEDVAPHIPEGVHFVPSHPLAGTEHSGPESGFAELFDNRWCLLVPVDGSAP
EAVARLRALWEGMGAHVDEMDADHHDLVLAVTSHTPHLIAYTMVGVADDLRRVTDSEVIKYSAAGFRDFTRIAASDPTMW
RDVFLTNKDATLEILGRFTEELFALQRAIRTGDGQHLHDYFTRTRSIRRGIIEAGQDTAAPDFGRGAKK

Specific function: Is competent to function as either prephenate dehydrogenase or as arogenate dehydrogenase [H]

COG id: COG0287

COG function: function code E; Prephenate dehydrogenase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 prephenate/arogenate dehydrogenase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008927
- InterPro:   IPR016040
- InterPro:   IPR003099 [H]

Pfam domain/function: PF02153 PDH [H]

EC number: =1.3.1.43; =1.3.1.12 [H]

Molecular weight: Translated: 33323; Mature: 33192

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEITAKPVYNRVALIGLGLIASSMFWAIKRAGLAGEVTGYARSAETRDTARRIGLCDRV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHH
CDTASAAVEGADLVVLCVPVGAMGAVAAEIAPALMPGATVSDVGSVKRHVIEDVAPHIPE
HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
GVHFVPSHPLAGTEHSGPESGFAELFDNRWCLLVPVDGSAPEAVARLRALWEGMGAHVDE
CCEECCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCHHH
MDADHHDLVLAVTSHTPHLIAYTMVGVADDLRRVTDSEVIKYSAAGFRDFTRIAASDPTM
CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCH
WRDVFLTNKDATLEILGRFTEELFALQRAIRTGDGQHLHDYFTRTRSIRRGIIEAGQDTA
HHHEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
APDFGRGAKK
CCCCCCCCCC
>Mature Secondary Structure 
SEITAKPVYNRVALIGLGLIASSMFWAIKRAGLAGEVTGYARSAETRDTARRIGLCDRV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHH
CDTASAAVEGADLVVLCVPVGAMGAVAAEIAPALMPGATVSDVGSVKRHVIEDVAPHIPE
HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
GVHFVPSHPLAGTEHSGPESGFAELFDNRWCLLVPVDGSAPEAVARLRALWEGMGAHVDE
CCEECCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCHHH
MDADHHDLVLAVTSHTPHLIAYTMVGVADDLRRVTDSEVIKYSAAGFRDFTRIAASDPTM
CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCH
WRDVFLTNKDATLEILGRFTEELFALQRAIRTGDGQHLHDYFTRTRSIRRGIIEAGQDTA
HHHEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
APDFGRGAKK
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7916685 [H]