| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081798
Identifier: 99081798
GI number: 99081798
Start: 2062849
End: 2063478
Strand: Reverse
Name: 99081798
Synonym: TM1040_1958
Alternate gene names: NA
Gene position: 2063478-2062849 (Counterclockwise)
Preceding gene: 99081800
Following gene: 99081797
Centisome position: 64.46
GC content: 57.14
Gene sequence:
>630_bases ATGTGTGGCGCACCCAAAGCGGGAATAGTTTTAGCATTTTGCACTTTGGATTTGACGCCGATGTATTCCGAGACGCCGGA TGGGCACGATGGGTCACCCACCGCAGATGTCCCGATGAGGGACAAAGTTCCCAATTGGGGCATTCTTCTTCTATTGCTCA CAACTCCGCAGGTTATGACCTTCCTTCTGCCAGAGAGTATCCTCGCGCGGTTCTCTGGACCTCAATACCTGCGTGAAATC TGGAGCATCGCGAGCTTTGTGACGATCATGGCGCTGAGCTCTGAAGGCTCGTGGAACGATCGCTTTTTGCGCGTGAACGC CTGGGGCATACATTACGGGAGAACGTACTCGCGGGGGAGCGGCTGGGGTACATTTTGGGCGAGGAAGGAAGGGACGGTCA ACGCGCTGCGCTGGGCGGATGTCGTGTCTGTCACCTACTTTCCAAAGAGTATGCTCACCGGATATGCGCGGCTGCGTGTG CGGGCACAGGTGCCGCTGGGGGCGCGCTACGATCTGACCTTTAAAACTGTGTCCCTTGATCCGAAATGTGCAAACCCAGC CGATCCTGAGGTCGCACGGGTACAGCTGGCTCTGGATCGGTACTGGCCTGAGTGGCGCGAGGGAAACTAG
Upstream 100 bases:
>100_bases CGGGGTCGTCCCCTGCGAGGCGCAATCTGGGGGAGGGGGACGCCCGTTTCAAGGCCCTGTTTTGCTTTGCAGGGCGGCTA TGTGCCTTGACAGGATGCCG
Downstream 100 bases:
>100_bases CGCGCGGGGCGTTCACGCCTCTTTCACGGTTTCGCGAGACAACCGCCTGCATCTGTTTGAAAACGCCGACCTGAGCCCCA CTTGCGAGTCTGGCAATTCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 209; Mature: 209
Protein sequence:
>209_residues MCGAPKAGIVLAFCTLDLTPMYSETPDGHDGSPTADVPMRDKVPNWGILLLLLTTPQVMTFLLPESILARFSGPQYLREI WSIASFVTIMALSSEGSWNDRFLRVNAWGIHYGRTYSRGSGWGTFWARKEGTVNALRWADVVSVTYFPKSMLTGYARLRV RAQVPLGARYDLTFKTVSLDPKCANPADPEVARVQLALDRYWPEWREGN
Sequences:
>Translated_209_residues MCGAPKAGIVLAFCTLDLTPMYSETPDGHDGSPTADVPMRDKVPNWGILLLLLTTPQVMTFLLPESILARFSGPQYLREI WSIASFVTIMALSSEGSWNDRFLRVNAWGIHYGRTYSRGSGWGTFWARKEGTVNALRWADVVSVTYFPKSMLTGYARLRV RAQVPLGARYDLTFKTVSLDPKCANPADPEVARVQLALDRYWPEWREGN >Mature_209_residues MCGAPKAGIVLAFCTLDLTPMYSETPDGHDGSPTADVPMRDKVPNWGILLLLLTTPQVMTFLLPESILARFSGPQYLREI WSIASFVTIMALSSEGSWNDRFLRVNAWGIHYGRTYSRGSGWGTFWARKEGTVNALRWADVVSVTYFPKSMLTGYARLRV RAQVPLGARYDLTFKTVSLDPKCANPADPEVARVQLALDRYWPEWREGN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23465; Mature: 23465
Theoretical pI: Translated: 8.79; Mature: 8.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCGAPKAGIVLAFCTLDLTPMYSETPDGHDGSPTADVPMRDKVPNWGILLLLLTTPQVMT CCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHH FLLPESILARFSGPQYLREIWSIASFVTIMALSSEGSWNDRFLRVNAWGIHYGRTYSRGS HHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEEEEEEECCCEECCCC GWGTFWARKEGTVNALRWADVVSVTYFPKSMLTGYARLRVRAQVPLGARYDLTFKTVSLD CCEEEEECCCCCCCCEEHHHEEEEEECCHHHHHHEEEEEEEEECCCCCEEEEEEEEEECC PKCANPADPEVARVQLALDRYWPEWREGN CCCCCCCCCCHHHEEEEHHHCCCCCCCCC >Mature Secondary Structure MCGAPKAGIVLAFCTLDLTPMYSETPDGHDGSPTADVPMRDKVPNWGILLLLLTTPQVMT CCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHH FLLPESILARFSGPQYLREIWSIASFVTIMALSSEGSWNDRFLRVNAWGIHYGRTYSRGS HHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEEEEEEECCCEECCCC GWGTFWARKEGTVNALRWADVVSVTYFPKSMLTGYARLRVRAQVPLGARYDLTFKTVSLD CCEEEEECCCCCCCCEEHHHEEEEEECCHHHHHHEEEEEEEEECCCCCEEEEEEEEEECC PKCANPADPEVARVQLALDRYWPEWREGN CCCCCCCCCCHHHEEEEHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA