Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081785

Identifier: 99081785

GI number: 99081785

Start: 2047873

End: 2048283

Strand: Direct

Name: 99081785

Synonym: TM1040_1944

Alternate gene names: NA

Gene position: 2047873-2048283 (Clockwise)

Preceding gene: 99081780

Following gene: 99081787

Centisome position: 63.98

GC content: 60.34

Gene sequence:

>411_bases
ATGTTCAGCTATTCCCTTTCTCGCACCGCCCTAGTCTTGGGCCTCGCTCTTCTGAGTGCCGTGCCGCTCAGCGCCAATGA
TGCCGAAGAGTTCAACTCTTACACGCAGGGCCGCACCATCCATTTCAGTTGGGAAGGTCAGGCCTATGGCGCAGAGCGCT
ACCTGCCCGGCCAGCGCGTGATCTGGTCGTTTCTGGATGGCCGCTGCGTCACTGGCGAATGGTATATGCAGTCTGGTGAC
ATCTGCTTTGTCTATGAGGATCGCCCAGAGCCGCAATGCTGGCGCTTTGACATCGGCGACAACGGTTTGAGCGTCTCCAT
CGCGCGCGACGACGGGTCGGTGCTGACGCTGAGAGAGCGCCTCTCCGTGCGTGACGAGATGGTTTGTCTCGGCCCCGAAG
TCGGCGTCTGA

Upstream 100 bases:

>100_bases
ACGGGGACACAAAGGTCAAAGCTGACCTTGCGCCACCCTTGGGCTACCCAAGCTGAAAAGCGGTCTTGGCTGGGCGCGAT
GCATGCGCCATGGTGGGCGC

Downstream 100 bases:

>100_bases
GGCCCGCGCAGAAGCGAGGCGCTGCCTCGCGCTCCGGGATATTTTTTGTTAGAAGAAAGCCCTGCCTGTCAGAATAGAGA
GCCCTGCTCTCCGGGCGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MFSYSLSRTALVLGLALLSAVPLSANDAEEFNSYTQGRTIHFSWEGQAYGAERYLPGQRVIWSFLDGRCVTGEWYMQSGD
ICFVYEDRPEPQCWRFDIGDNGLSVSIARDDGSVLTLRERLSVRDEMVCLGPEVGV

Sequences:

>Translated_136_residues
MFSYSLSRTALVLGLALLSAVPLSANDAEEFNSYTQGRTIHFSWEGQAYGAERYLPGQRVIWSFLDGRCVTGEWYMQSGD
ICFVYEDRPEPQCWRFDIGDNGLSVSIARDDGSVLTLRERLSVRDEMVCLGPEVGV
>Mature_136_residues
MFSYSLSRTALVLGLALLSAVPLSANDAEEFNSYTQGRTIHFSWEGQAYGAERYLPGQRVIWSFLDGRCVTGEWYMQSGD
ICFVYEDRPEPQCWRFDIGDNGLSVSIARDDGSVLTLRERLSVRDEMVCLGPEVGV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15270; Mature: 15270

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSYSLSRTALVLGLALLSAVPLSANDAEEFNSYTQGRTIHFSWEGQAYGAERYLPGQRV
CCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHH
IWSFLDGRCVTGEWYMQSGDICFVYEDRPEPQCWRFDIGDNGLSVSIARDDGSVLTLRER
HHHHCCCEEECCEEEEECCCEEEEECCCCCCCEEEEEECCCCEEEEEEECCCCEEEEHHH
LSVRDEMVCLGPEVGV
CCCCCCEEEECCCCCC
>Mature Secondary Structure
MFSYSLSRTALVLGLALLSAVPLSANDAEEFNSYTQGRTIHFSWEGQAYGAERYLPGQRV
CCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHH
IWSFLDGRCVTGEWYMQSGDICFVYEDRPEPQCWRFDIGDNGLSVSIARDDGSVLTLRER
HHHHCCCEEECCEEEEECCCEEEEECCCCCCCEEEEEECCCCEEEEEEECCCCEEEEHHH
LSVRDEMVCLGPEVGV
CCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA