| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081769
Identifier: 99081769
GI number: 99081769
Start: 2027532
End: 2028440
Strand: Direct
Name: 99081769
Synonym: TM1040_1928
Alternate gene names: NA
Gene position: 2027532-2028440 (Clockwise)
Preceding gene: 99081768
Following gene: 99081770
Centisome position: 63.34
GC content: 65.35
Gene sequence:
>909_bases ATGGCTCAGCGGTTTGGCGGCAAATACAGCCCCTCTGGTCAAGATGGCGCACGCCCCGACGGACGCCCGACCAGCTCTTC TCGTATGACGGCGACCGCGCGGGTGAACCCTGTGGGGCTCCGCGCCAATCTGATGTTTGTGCCTGCGGCCGTGATGATGC TCTTCTCGCTGGCCTCGGGCGCCGCCGGTCTGGTGCTGGGCTTGATCAGTGCAGGGCTCTGGGCGGCAAGCGCCGTGATG CTGCGCGAGGGCCTGAAGGCCGAAGCCGCCTATGACGACCGCAAAGTGGCGCGCCGCCCTGCCCTGCCGCGCAAGATCCT TGCCGCCAGCCTCTGCGGTCTGGGCGGCGCGGTCGGCGCGTGGTCCAGCGAGCCGGGCGTGATCACTGCTGCGCTTTATG GCGTCGCCTGCGTTGGGCTGCATCTTGCGGCTTTTGGCCTTGATCCCCTCAGCGACAAAGGCGTCGAAGGCATTGATGAC TTCCAAAGCGCCCGCGTCGCGCGCGTGGTCGATGAGGCCGAAACCCATCTGGCCGCCATGAAAGACGCCGTACTGCGCGC CAAAGACCGCTCGGTCGAGCTGCGCGTGGACCAGTTTCAGGCGGTCGCACGCGATCTGTGCCGCACTGTCGAAGAAGACC CCCGCGACCTGACCGCTGCGCGCAAGTACCTCACCGTCTACTTGCTCGGAGCGCGGGATGCGACGATCAAATTTGCCGAT ATCTTTGCCCGCAGCGGCAGCACCGAGGCGCGCGCCGACTACCTCGCGCTGCTCGACGATCTGGAACAGAATTTCGCCGC CCGGAATGAAAAACTCCTGCTGGAGGACCGGGGCGATCTGAATATTGAAATTGATGTGTTGCGCGCCCGGCTGGAGCGCG AAGGCGTCCAGTTGGACCGCCCCTCTTAA
Upstream 100 bases:
>100_bases AACGTTTTTGGGGGCGAAAGAGGTGCAAACCGTCGCATATGTCGCGCTGTTGATCCTGATGCTTGGCATCGGGACCGGCT GGATTGTCGGGGTCTGACGC
Downstream 100 bases:
>100_bases CCTGACAGGAAAGGCCTGGCCGATGTCTGAAACGATTCAACAAAAAGCAGTAGAAGCCGAAACGCTGGTGAAGGAAGTAA CCGAAGTGTCCCTGCCCGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 302; Mature: 301
Protein sequence:
>302_residues MAQRFGGKYSPSGQDGARPDGRPTSSSRMTATARVNPVGLRANLMFVPAAVMMLFSLASGAAGLVLGLISAGLWAASAVM LREGLKAEAAYDDRKVARRPALPRKILAASLCGLGGAVGAWSSEPGVITAALYGVACVGLHLAAFGLDPLSDKGVEGIDD FQSARVARVVDEAETHLAAMKDAVLRAKDRSVELRVDQFQAVARDLCRTVEEDPRDLTAARKYLTVYLLGARDATIKFAD IFARSGSTEARADYLALLDDLEQNFAARNEKLLLEDRGDLNIEIDVLRARLEREGVQLDRPS
Sequences:
>Translated_302_residues MAQRFGGKYSPSGQDGARPDGRPTSSSRMTATARVNPVGLRANLMFVPAAVMMLFSLASGAAGLVLGLISAGLWAASAVM LREGLKAEAAYDDRKVARRPALPRKILAASLCGLGGAVGAWSSEPGVITAALYGVACVGLHLAAFGLDPLSDKGVEGIDD FQSARVARVVDEAETHLAAMKDAVLRAKDRSVELRVDQFQAVARDLCRTVEEDPRDLTAARKYLTVYLLGARDATIKFAD IFARSGSTEARADYLALLDDLEQNFAARNEKLLLEDRGDLNIEIDVLRARLEREGVQLDRPS >Mature_301_residues AQRFGGKYSPSGQDGARPDGRPTSSSRMTATARVNPVGLRANLMFVPAAVMMLFSLASGAAGLVLGLISAGLWAASAVML REGLKAEAAYDDRKVARRPALPRKILAASLCGLGGAVGAWSSEPGVITAALYGVACVGLHLAAFGLDPLSDKGVEGIDDF QSARVARVVDEAETHLAAMKDAVLRAKDRSVELRVDQFQAVARDLCRTVEEDPRDLTAARKYLTVYLLGARDATIKFADI FARSGSTEARADYLALLDDLEQNFAARNEKLLLEDRGDLNIEIDVLRARLEREGVQLDRPS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32344; Mature: 32213
Theoretical pI: Translated: 6.56; Mature: 6.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQRFGGKYSPSGQDGARPDGRPTSSSRMTATARVNPVGLRANLMFVPAAVMMLFSLASG CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEHHHHHHHHHHHHHHHHCC AAGLVLGLISAGLWAASAVMLREGLKAEAAYDDRKVARRPALPRKILAASLCGLGGAVGA HHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCC WSSEPGVITAALYGVACVGLHLAAFGLDPLSDKGVEGIDDFQSARVARVVDEAETHLAAM CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH KDAVLRAKDRSVELRVDQFQAVARDLCRTVEEDPRDLTAARKYLTVYLLGARDATIKFAD HHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEEEECCCCCEEEHHH IFARSGSTEARADYLALLDDLEQNFAARNEKLLLEDRGDLNIEIDVLRARLEREGVQLDR HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEHHHHHHHHHHCCCCCCC PS CC >Mature Secondary Structure AQRFGGKYSPSGQDGARPDGRPTSSSRMTATARVNPVGLRANLMFVPAAVMMLFSLASG CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEHHHHHHHHHHHHHHHHCC AAGLVLGLISAGLWAASAVMLREGLKAEAAYDDRKVARRPALPRKILAASLCGLGGAVGA HHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCC WSSEPGVITAALYGVACVGLHLAAFGLDPLSDKGVEGIDDFQSARVARVVDEAETHLAAM CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH KDAVLRAKDRSVELRVDQFQAVARDLCRTVEEDPRDLTAARKYLTVYLLGARDATIKFAD HHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEEEECCCCCEEEHHH IFARSGSTEARADYLALLDDLEQNFAARNEKLLLEDRGDLNIEIDVLRARLEREGVQLDR HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEHHHHHHHHHHCCCCCCC PS CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA