Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081758

Identifier: 99081758

GI number: 99081758

Start: 2018542

End: 2019306

Strand: Reverse

Name: 99081758

Synonym: TM1040_1917

Alternate gene names: NA

Gene position: 2019306-2018542 (Counterclockwise)

Preceding gene: 99081759

Following gene: 99081757

Centisome position: 63.08

GC content: 66.54

Gene sequence:

>765_bases
ATGCGAGTTCCAGCAATCTTGGTCGCGGTCAGCGCGATTGCACTTGTGGCTTGTAGCCCGCAAGTGCCCGACAGCGCAGC
AGGGGTGGGGGATGCAACAAGCCCCTTCAACGCGCCGCCCGAAGTCGAGGCGGGGCGTACCCTGAACGGCGACCCGCTGG
TACCTGCCACCCAAATCTCGGACGAGAGCACCGCCACCAATACCAACTGGCAGCAGCCTCGCCCCTCGGGAGGGGCTGCC
GCATCTGCAAGTGACGACATTGCGCGTGAAACCGCTGCTGCGCTCTCTGCGGCAGGGCAGAATTCGGGGCGCGCACCGCT
CGAGGCCAGCCCCTCCAACCCCGCGCCTGCCCTGGTGGGCAACCCGAACCTGTCGGATGAGAACAGTTTTGAGGCGGTCT
CTGCCCGGCAAACCATCGAAAGCGACGCCGAGCGTATCGCACGCCAGCGCGCGCAATATCAGGTGGTGACGCCAACTGCT
GTGCCGGACCGTCCAGAGGATCTGGCCCCCAATATCGTGCGCTACGCCCTCTCGACGTCAAACCCGCGCGGGCAGCGGAT
CTACAGCCGCACGGGGATCAATCTGCAGGCCCGCTCGGCCCGCAACTGCGCCGAATACCCCTCTGCAGACCTCGCCCAGA
CGGCGTTCCTCGAGATGGGTGGCCCCAAACGGGACCGCAAAGCGCTTGATCCCGATGGTGATGGCTACGCCTGTGGCTGG
GATCCCGCGCCCTTCCGGGCTGCCGTTCGCGCGGCGGGCAACTGA

Upstream 100 bases:

>100_bases
ACCGCCTACGCGCTGGAGCAAGCGGCCGGATTTGTGGCCAAGCCCGCCCAGTGGTGGTAAAAGGACCTCCAAAGCAAGAC
TGAGCAGACAGGTGGCAGCA

Downstream 100 bases:

>100_bases
TCTCTTACCATGGTCTCTGCTGACCCCATCTGGCACCCGAGCCCCAACTTCGGGGCCCGGAGGGACGGGCTGCAGCCGCA
TCTCATTGTTCTGCACTACA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MRVPAILVAVSAIALVACSPQVPDSAAGVGDATSPFNAPPEVEAGRTLNGDPLVPATQISDESTATNTNWQQPRPSGGAA
ASASDDIARETAAALSAAGQNSGRAPLEASPSNPAPALVGNPNLSDENSFEAVSARQTIESDAERIARQRAQYQVVTPTA
VPDRPEDLAPNIVRYALSTSNPRGQRIYSRTGINLQARSARNCAEYPSADLAQTAFLEMGGPKRDRKALDPDGDGYACGW
DPAPFRAAVRAAGN

Sequences:

>Translated_254_residues
MRVPAILVAVSAIALVACSPQVPDSAAGVGDATSPFNAPPEVEAGRTLNGDPLVPATQISDESTATNTNWQQPRPSGGAA
ASASDDIARETAAALSAAGQNSGRAPLEASPSNPAPALVGNPNLSDENSFEAVSARQTIESDAERIARQRAQYQVVTPTA
VPDRPEDLAPNIVRYALSTSNPRGQRIYSRTGINLQARSARNCAEYPSADLAQTAFLEMGGPKRDRKALDPDGDGYACGW
DPAPFRAAVRAAGN
>Mature_254_residues
MRVPAILVAVSAIALVACSPQVPDSAAGVGDATSPFNAPPEVEAGRTLNGDPLVPATQISDESTATNTNWQQPRPSGGAA
ASASDDIARETAAALSAAGQNSGRAPLEASPSNPAPALVGNPNLSDENSFEAVSARQTIESDAERIARQRAQYQVVTPTA
VPDRPEDLAPNIVRYALSTSNPRGQRIYSRTGINLQARSARNCAEYPSADLAQTAFLEMGGPKRDRKALDPDGDGYACGW
DPAPFRAAVRAAGN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26331; Mature: 26331

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVPAILVAVSAIALVACSPQVPDSAAGVGDATSPFNAPPEVEAGRTLNGDPLVPATQIS
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DESTATNTNWQQPRPSGGAAASASDDIARETAAALSAAGQNSGRAPLEASPSNPAPALVG
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEC
NPNLSDENSFEAVSARQTIESDAERIARQRAQYQVVTPTAVPDRPEDLAPNIVRYALSTS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCHHHHHHHHHHHHHCC
NPRGQRIYSRTGINLQARSARNCAEYPSADLAQTAFLEMGGPKRDRKALDPDGDGYACGW
CCCCCEEHHHCCCCEECCCCCCHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEECCC
DPAPFRAAVRAAGN
CCHHHHHHHHHCCC
>Mature Secondary Structure
MRVPAILVAVSAIALVACSPQVPDSAAGVGDATSPFNAPPEVEAGRTLNGDPLVPATQIS
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DESTATNTNWQQPRPSGGAAASASDDIARETAAALSAAGQNSGRAPLEASPSNPAPALVG
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEC
NPNLSDENSFEAVSARQTIESDAERIARQRAQYQVVTPTAVPDRPEDLAPNIVRYALSTS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCHHHHHHHHHHHHHCC
NPRGQRIYSRTGINLQARSARNCAEYPSADLAQTAFLEMGGPKRDRKALDPDGDGYACGW
CCCCCEEHHHCCCCEECCCCCCHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEECCC
DPAPFRAAVRAAGN
CCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA