| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99081743
Identifier: 99081743
GI number: 99081743
Start: 2004704
End: 2005543
Strand: Direct
Name: 99081743
Synonym: TM1040_1902
Alternate gene names: NA
Gene position: 2004704-2005543 (Clockwise)
Preceding gene: 99081741
Following gene: 99081746
Centisome position: 62.63
GC content: 59.88
Gene sequence:
>840_bases ATGTCCACACCCGTATTGAACCTTGATCCCGACACGCTTTTGATGTCCTCAAAAGACGCCCGCGCTGCAGCCGCACCCTA TGCGGCAGAGTATCAGGGCCGCGGCCCCTTCAACTACGGTGGCTATGACAACTTCCTGAACCCAGAGATCCTCGAGCGTG TCCGCGAGGAGCTGAAGCAACTGCCCGAAGCAGCCAACAGCTATGATCGCCCGCAGGAGCGACTAAAGACCTCTTATGTG CCCGAACGCCTGCCGATGTATACGCGGCAACTGTTTTACGCGCTGAACTCGCGCCCGATGCTGGCGTTCATCGAGGAACT CACCGGTATCAAGGGGCTGATCCCCGATCCCTATTTTGCAGGTGGCGGCGTTCATGTGGTGGCCAATGGCGGGCATCTGG ATATTCACGCAGATTTCAATCACCACGCGGGCCTGAACCTCGAGCGTCGCGTGAACCTGCTGATCTACCTCAACAAGGAC TGGCGCGAGGAATATGGCGGTTCCTTCGAGGTCTGGGACGAGAATATGGCTGGAAAGCTTGCCAGTTACGTGCCGCTCTT TAACCGGATGTGCATGTTCTCCACCTCCTCCGAGAGCTGGCATGGCAACCCCGAGCCGGTGAACCACCCCGATGGCGAGC CGCGCATGTCGATTGCGCTCTATTACTACACCGCGACATGGGACAGCACCCGCAAGAGCCACACCACGCTCTTTAAACCG CGCCCCGGCACCAAGGACCAGCGCGACCGGCAGGTGGCGCGGCGTGAGCTCTTGCAAGACCTCTTGCCGCCGGTGCTCCA CCGCAAGCTTGCGTGGCGTCTGGAGAAGCTGGGGTTTTGA
Upstream 100 bases:
>100_bases AATAAAAGAGTTGCGATCAGGCCGGCAGCCGACAAGTCTGGACACAGAGCCGCGCCCGACCCGATGGGGCGCCTCACGCC ATTTCAGACGAGTCCTCATC
Downstream 100 bases:
>100_bases GCCCGCCCTGCCCCTGAGGCCCGCCTGCCCTGACGAACCCTCTGGGATCCGCCGGATCTGCGTGATCCGGCATGCTCAAG ATCGGCGCGCAATGGGGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 279; Mature: 278
Protein sequence:
>279_residues MSTPVLNLDPDTLLMSSKDARAAAAPYAAEYQGRGPFNYGGYDNFLNPEILERVREELKQLPEAANSYDRPQERLKTSYV PERLPMYTRQLFYALNSRPMLAFIEELTGIKGLIPDPYFAGGGVHVVANGGHLDIHADFNHHAGLNLERRVNLLIYLNKD WREEYGGSFEVWDENMAGKLASYVPLFNRMCMFSTSSESWHGNPEPVNHPDGEPRMSIALYYYTATWDSTRKSHTTLFKP RPGTKDQRDRQVARRELLQDLLPPVLHRKLAWRLEKLGF
Sequences:
>Translated_279_residues MSTPVLNLDPDTLLMSSKDARAAAAPYAAEYQGRGPFNYGGYDNFLNPEILERVREELKQLPEAANSYDRPQERLKTSYV PERLPMYTRQLFYALNSRPMLAFIEELTGIKGLIPDPYFAGGGVHVVANGGHLDIHADFNHHAGLNLERRVNLLIYLNKD WREEYGGSFEVWDENMAGKLASYVPLFNRMCMFSTSSESWHGNPEPVNHPDGEPRMSIALYYYTATWDSTRKSHTTLFKP RPGTKDQRDRQVARRELLQDLLPPVLHRKLAWRLEKLGF >Mature_278_residues STPVLNLDPDTLLMSSKDARAAAAPYAAEYQGRGPFNYGGYDNFLNPEILERVREELKQLPEAANSYDRPQERLKTSYVP ERLPMYTRQLFYALNSRPMLAFIEELTGIKGLIPDPYFAGGGVHVVANGGHLDIHADFNHHAGLNLERRVNLLIYLNKDW REEYGGSFEVWDENMAGKLASYVPLFNRMCMFSTSSESWHGNPEPVNHPDGEPRMSIALYYYTATWDSTRKSHTTLFKPR PGTKDQRDRQVARRELLQDLLPPVLHRKLAWRLEKLGF
Specific function: Unknown
COG id: COG3751
COG function: function code O; Predicted proline hydroxylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32018; Mature: 31886
Theoretical pI: Translated: 7.03; Mature: 7.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTPVLNLDPDTLLMSSKDARAAAAPYAAEYQGRGPFNYGGYDNFLNPEILERVREELKQ CCCCCCCCCCCCEEECCCCCHHHHCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH LPEAANSYDRPQERLKTSYVPERLPMYTRQLFYALNSRPMLAFIEELTGIKGLIPDPYFA HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCC GGGVHVVANGGHLDIHADFNHHAGLNLERRVNLLIYLNKDWREEYGGSFEVWDENMAGKL CCCEEEEECCCEEEEEECCCCCCCCCHHHEEEEEEEECCHHHHHHCCCEEEECCHHHHHH ASYVPLFNRMCMFSTSSESWHGNPEPVNHPDGEPRMSIALYYYTATWDSTRKSHTTLFKP HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEECC RPGTKDQRDRQVARRELLQDLLPPVLHRKLAWRLEKLGF CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure STPVLNLDPDTLLMSSKDARAAAAPYAAEYQGRGPFNYGGYDNFLNPEILERVREELKQ CCCCCCCCCCCEEECCCCCHHHHCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH LPEAANSYDRPQERLKTSYVPERLPMYTRQLFYALNSRPMLAFIEELTGIKGLIPDPYFA HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCC GGGVHVVANGGHLDIHADFNHHAGLNLERRVNLLIYLNKDWREEYGGSFEVWDENMAGKL CCCEEEEECCCEEEEEECCCCCCCCCHHHEEEEEEEECCHHHHHHCCCEEEECCHHHHHH ASYVPLFNRMCMFSTSSESWHGNPEPVNHPDGEPRMSIALYYYTATWDSTRKSHTTLFKP HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEECC RPGTKDQRDRQVARRELLQDLLPPVLHRKLAWRLEKLGF CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA