Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081741

Identifier: 99081741

GI number: 99081741

Start: 2002217

End: 2003110

Strand: Direct

Name: 99081741

Synonym: TM1040_1900

Alternate gene names: NA

Gene position: 2002217-2003110 (Clockwise)

Preceding gene: 99081738

Following gene: 99081743

Centisome position: 62.55

GC content: 64.09

Gene sequence:

>894_bases
ATGACCCCGGATCGACCTGTTTTCACCCATCGTCTCTCTGCCTCGGGATCGGACAGCCCGCGTGCTGACGCGGGAGAGAT
TTTCCCCTATTGGAGCTTTACAAAGACGGTGATCGCAATCTGCGCCCTGCGGATGGTGCAGGACGGTCGGCTCGACCTCG
ACGCCCCTCTGGCGGGCTTTGATTTCTCGTTGCGACACCTGCTTGATCATACTGCGGGGCTGCCGGATTATTTCACCCTG
CCCGCGTATGGGGCGGCTGTGGCGCAAAATGAGGAGCCCTGGTCTGCCGAGGCTCTGCGCGCGGCCACCATGGCGCAAGG
CCGGCTGTTTGCCCCCGGCACGGGCTGGTCCTATTCCAATCTTGGGTTCATGGTGGCGCGGGACCTGCTTGAGGAGGTGG
CCGGGCAATCATTCTCAGATCTCCTCCAGCAGTTGATCTGCGCCCCGCTTGAACTGCGTTCGATCACGCTTGCCCAGACC
CGCCGCGATTTTGAGCGCGTCCATTGGGCTGCCGCAAAGCGCTATCATCCTGGCTGGGTCTATCATGGCTGCCTGACGGG
CACAGCCGCAGATGCGGCGCGGCTCCTGCAGGGGCTCTTTGAGGGGACGCTGCTTGATGCGGAGATGCTGCGCGAGATGC
GCAAGAGCCATCCCCTCGGCGGGGTAATCGAGGGGCGCCCCTGGACCGAATGCGGCTATGCGCTGGGGCTCATGAGTGGG
CGCGCAGGGGAGGCCGGGCGCATGATCGGCCATTCCGGCGCAGGCCCCTTCAGCGTCAACGCAGTCTATCATTTCCCCGA
CCTGTCACCGCCTGTTACCGTGGCCAGTTTCACCGACGGCACCCTTGAAGGGGTTGCAGAACATGCGGCGGTTGCGGCGG
CCCTGTCAGCCTGA

Upstream 100 bases:

>100_bases
CGCAGGCCCTTCACCCCGTGCAGGTATCAGGTCCTATCTGCTGGCCTCTCAATTCATTGCGGGAGATTGCGCTCGCTCCG
CGAGGTCTTATGGTGGCCGA

Downstream 100 bases:

>100_bases
CCGCACCACTTGCGGGCGTCCTCGCAGGAGGCGTGGCGCATGAGGATGTTCCGCCGCTTGGTATTGCGCGTGCAAACCTG
CTGGCTGTCACATTCCACTT

Product: beta-lactamase

Products: NA

Alternate protein names: Serine-Type D-Ala-D-Ala Carboxypeptidase; Alkaline D-Peptidase; D-Alanyl-D-Alanine Carboxypeptidase; D-Stereospecific Peptide Hydrolase; Beta-Lactamase Class C; Beta-Lactamase Class C-Like Protein; Peptidase; Beta-Lactamase Family Protein; Betalactamase; Hydrolase; Dipeptidil Carboxypeptidase; Protease; S9 Family Peptidase; S12 Family Peptidase

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MTPDRPVFTHRLSASGSDSPRADAGEIFPYWSFTKTVIAICALRMVQDGRLDLDAPLAGFDFSLRHLLDHTAGLPDYFTL
PAYGAAVAQNEEPWSAEALRAATMAQGRLFAPGTGWSYSNLGFMVARDLLEEVAGQSFSDLLQQLICAPLELRSITLAQT
RRDFERVHWAAAKRYHPGWVYHGCLTGTAADAARLLQGLFEGTLLDAEMLREMRKSHPLGGVIEGRPWTECGYALGLMSG
RAGEAGRMIGHSGAGPFSVNAVYHFPDLSPPVTVASFTDGTLEGVAEHAAVAAALSA

Sequences:

>Translated_297_residues
MTPDRPVFTHRLSASGSDSPRADAGEIFPYWSFTKTVIAICALRMVQDGRLDLDAPLAGFDFSLRHLLDHTAGLPDYFTL
PAYGAAVAQNEEPWSAEALRAATMAQGRLFAPGTGWSYSNLGFMVARDLLEEVAGQSFSDLLQQLICAPLELRSITLAQT
RRDFERVHWAAAKRYHPGWVYHGCLTGTAADAARLLQGLFEGTLLDAEMLREMRKSHPLGGVIEGRPWTECGYALGLMSG
RAGEAGRMIGHSGAGPFSVNAVYHFPDLSPPVTVASFTDGTLEGVAEHAAVAAALSA
>Mature_296_residues
TPDRPVFTHRLSASGSDSPRADAGEIFPYWSFTKTVIAICALRMVQDGRLDLDAPLAGFDFSLRHLLDHTAGLPDYFTLP
AYGAAVAQNEEPWSAEALRAATMAQGRLFAPGTGWSYSNLGFMVARDLLEEVAGQSFSDLLQQLICAPLELRSITLAQTR
RDFERVHWAAAKRYHPGWVYHGCLTGTAADAARLLQGLFEGTLLDAEMLREMRKSHPLGGVIEGRPWTECGYALGLMSGR
AGEAGRMIGHSGAGPFSVNAVYHFPDLSPPVTVASFTDGTLEGVAEHAAVAAALSA

Specific function: Unknown

COG id: COG1680

COG function: function code V; Beta-lactamase class C and other penicillin binding proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31980; Mature: 31848

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPDRPVFTHRLSASGSDSPRADAGEIFPYWSFTKTVIAICALRMVQDGRLDLDAPLAGF
CCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
DFSLRHLLDHTAGLPDYFTLPAYGAAVAQNEEPWSAEALRAATMAQGRLFAPGTGWSYSN
CHHHHHHHHHHCCCCCCEECCCHHHHHCCCCCCCHHHHHHHHHHHCCEEECCCCCCCCCC
LGFMVARDLLEEVAGQSFSDLLQQLICAPLELRSITLAQTRRDFERVHWAAAKRYHPGWV
HHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
YHGCLTGTAADAARLLQGLFEGTLLDAEMLREMRKSHPLGGVIEGRPWTECGYALGLMSG
EECHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHCCC
RAGEAGRMIGHSGAGPFSVNAVYHFPDLSPPVTVASFTDGTLEGVAEHAAVAAALSA
CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TPDRPVFTHRLSASGSDSPRADAGEIFPYWSFTKTVIAICALRMVQDGRLDLDAPLAGF
CCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
DFSLRHLLDHTAGLPDYFTLPAYGAAVAQNEEPWSAEALRAATMAQGRLFAPGTGWSYSN
CHHHHHHHHHHCCCCCCEECCCHHHHHCCCCCCCHHHHHHHHHHHCCEEECCCCCCCCCC
LGFMVARDLLEEVAGQSFSDLLQQLICAPLELRSITLAQTRRDFERVHWAAAKRYHPGWV
HHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
YHGCLTGTAADAARLLQGLFEGTLLDAEMLREMRKSHPLGGVIEGRPWTECGYALGLMSG
EECHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHCCC
RAGEAGRMIGHSGAGPFSVNAVYHFPDLSPPVTVASFTDGTLEGVAEHAAVAAALSA
CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA