Click here to switch to the map view.

The map label for this gene is ybiA [H]

Identifier: 99081738

GI number: 99081738

Start: 1999008

End: 1999481

Strand: Direct

Name: ybiA [H]

Synonym: TM1040_1897

Alternate gene names: 99081738

Gene position: 1999008-1999481 (Clockwise)

Preceding gene: 99081737

Following gene: 99081741

Centisome position: 62.45

GC content: 58.65

Gene sequence:

>474_bases
ATGACACCGCCCTCTCCAGATACGATCTATTTTTACGCGCAAACGGACCCTTATGCGGAGTTTTCAAACTTCGCGCCCTA
TGGGGTGTGCTTTGAGGACATTTGGTGGCCGACGGTGGAACACTATTTTCAGGCGATGAAATTTCACGATGCAGCCTATC
GCACACGCATTCGCCGGTGCCAAAAACCCAAGGATGCCAAAGCCCTTGGCATGACGCGCAAGATCCCCCTGCGTGCCGAC
TGGGAGGAGGTCAAGGATGACATCATGTATGCGGCGGTCTTGTGCAAGTTTCGCACCCATGGCGCGCCGCGGCAGTTGCT
TCTTGGCACCGGCGATGCCCCATTGGTGGAGAACGCGCCTATGGATGCCTATTGGGGCTGCGGCCCGGATGGGCTGGGTC
TCAACAAGCTGGGCCGGATCCTGATGCGGGTTCGGGGTGAACTGGCTGAGGATGCGGCGGCGCTGAATCGCTGA

Upstream 100 bases:

>100_bases
GAGGGCACGTTTCTGGGGGGCTGCCTCTTTTCGGGGCGTCAGGCTGGGCGTTCGGATCAGATCGCGTGATCTGGGCGGAA
ACGTGTGCTAGGCAGCCGCG

Downstream 100 bases:

>100_bases
TGAGGCGGCGCTGGCGGTCCAAATCAGGGACGGGCGAGGACCGCTGAGACCAACGCTCCCCGGGGTATTTCGTCTCGGAT
GTGCCCGCCAACATCAGCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MTPPSPDTIYFYAQTDPYAEFSNFAPYGVCFEDIWWPTVEHYFQAMKFHDAAYRTRIRRCQKPKDAKALGMTRKIPLRAD
WEEVKDDIMYAAVLCKFRTHGAPRQLLLGTGDAPLVENAPMDAYWGCGPDGLGLNKLGRILMRVRGELAEDAAALNR

Sequences:

>Translated_157_residues
MTPPSPDTIYFYAQTDPYAEFSNFAPYGVCFEDIWWPTVEHYFQAMKFHDAAYRTRIRRCQKPKDAKALGMTRKIPLRAD
WEEVKDDIMYAAVLCKFRTHGAPRQLLLGTGDAPLVENAPMDAYWGCGPDGLGLNKLGRILMRVRGELAEDAAALNR
>Mature_156_residues
TPPSPDTIYFYAQTDPYAEFSNFAPYGVCFEDIWWPTVEHYFQAMKFHDAAYRTRIRRCQKPKDAKALGMTRKIPLRADW
EEVKDDIMYAAVLCKFRTHGAPRQLLLGTGDAPLVENAPMDAYWGCGPDGLGLNKLGRILMRVRGELAEDAAALNR

Specific function: Required for swarming motility [H]

COG id: COG3236

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ybiA family [H]

Homologues:

Organism=Escherichia coli, GI1787017, Length=141, Percent_Identity=48.2269503546099, Blast_Score=137, Evalue=3e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012816 [H]

Pfam domain/function: PF08719 DUF1768 [H]

EC number: NA

Molecular weight: Translated: 17864; Mature: 17732

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPPSPDTIYFYAQTDPYAEFSNFAPYGVCFEDIWWPTVEHYFQAMKFHDAAYRTRIRRC
CCCCCCCEEEEEECCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QKPKDAKALGMTRKIPLRADWEEVKDDIMYAAVLCKFRTHGAPRQLLLGTGDAPLVENAP
CCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC
MDAYWGCGPDGLGLNKLGRILMRVRGELAEDAAALNR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TPPSPDTIYFYAQTDPYAEFSNFAPYGVCFEDIWWPTVEHYFQAMKFHDAAYRTRIRRC
CCCCCCEEEEEECCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QKPKDAKALGMTRKIPLRADWEEVKDDIMYAAVLCKFRTHGAPRQLLLGTGDAPLVENAP
CCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC
MDAYWGCGPDGLGLNKLGRILMRVRGELAEDAAALNR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]