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The map label for this gene is ydiF [H]

Identifier: 99081729

GI number: 99081729

Start: 1988725

End: 1990362

Strand: Direct

Name: ydiF [H]

Synonym: TM1040_1888

Alternate gene names: 99081729

Gene position: 1988725-1990362 (Clockwise)

Preceding gene: 99081726

Following gene: 99081732

Centisome position: 62.13

GC content: 66.67

Gene sequence:

>1638_bases
ATGTCCTCTCCCTCCGCTTGCGTCCTGCTCGACGGGTTGCGCTGGTCCGCCGCTGACGCGCGACCGCTTTTCTCTGATCT
TACCCTTCATCTGCAATCCGGACGGATGGGTCTTGTCGGCCGAAACGGCTCTGGCAAGACAACACTTCTGCGTCTGATTG
CAGGCGACCTGCCCCCTGAGGGCGGGCGCGTACAGGTCTCTGGCCGTCTGGGATGGATGCGACAGGAGGTGGCCAGCGCG
GCGCATCTCACGGTGGCTGATCTCTTTGGGGTAGCCCCTGCCCTTGCGCGGTTGCGGCGTATCGAGCGCGGCGTGGCCAC
GGACACCGACCTGGCCGAGGCAGATTGGACGCTGCCCGCGCGCATTGAGGCAGCCTTGCAACGCTGCGGGGTGTCCGTCG
CGCCAGAAGAGCCGCTCGCGCCGCTTTCGGGAGGGCAGCGCACGCGTGTGGCGCTGGCCGCGCAGATCTTTCAGGCACCC
GATATTCTGCTTCTGGATGAGCCCACAAACACGCTTGATGCCGAGGGGCGCGCCATGGTGCGGAGGCTGCTGCGCGACTG
GCGCGGCCTTGCGCTGGTGGTGAGCCATGATCGCGCTGTTTTGGAAGAGATGGACGCGATCGTGGAGCTGCGGGCGGGTG
GCGCCCAGCGCTATGCAGGCCCTTACAGCCAGTATCGCGCCGAGCGGGACATGGAGCTGGCTGCGGCCTATCAGGACCTT
CATGAGGCCGAGAAGACCCGCAAGGAAACCATGCGCCGCGCCCAGGACGCCACAGAGCGCAAGGCCCGGCGCGACAGCCA
AGGCCGGGCGGCGCGGGCGTCAGGAAGTCAGCCCAAGGTGTTGCTGGACAAGGCAAAAGAACGTGCCGAGGCCTCCAAGG
GAGCGGGCGTTCGGCTGCGCGAGGCCCGGCGCACCGAGGCCGAGGCCGCCCTTGCTGATGCGCGTGAGCGCATAGAGGTG
CTTGAACCGATCCAGATGGAGATCCCCGCAACCGGCCTGCGGAACCAGACGCGCCTCGTCGCGCTGCAGCACATCACCGC
GGGCTATGGCCCCCATACGGTTTTGCGGGATTTTTCACTGGAGATCACCGGGCCGGAGCGGATCGCCGTGATGGGCCCCA
ATGGCTGTGGCAAGACCACGCTGTTGTCACTGATCCTCGGACATCTTGAGCCACACGCCGGGCACATCACGCGCCCGGCA
GAGGCGGCACTGCTGGATCAGCATCTGAGCCTCTTGAAGAGCGACGAGACGCTCTTGGAAAATTACCTTCGGCTCAACCC
CGGTGTGGGAGCGCAGGATGCCCATGCGGCGCTGGCGCGGTTTCGGTTTCGCGCCTCCGAGGCGCTGTGGCAGGCCGCGG
CGCTCAGTAGCGGGCAGCGGCTTCGGGCGGGGCTCGCCTGCACGCTGGCACGTCCAACTCCGCCGCCGCTTCTGGTGCTG
GACGAGCCGACCAATCACCTTGATTTTGAGGGGCTGGAGGCACTGGAGGCGGCGCTTTTGGGGTATGACGGTGCGCTCAT
CGTGGTGAGCCACGACAGCGCGTTCCTTGACCGGATCGCTCTCACCCGCCGCCTCGTGCTGCCGTCTCAGCGCTCGGGCA
GCGGGATAAATTCACTGTCATCGCCCGGTGGCAGCTGA

Upstream 100 bases:

>100_bases
GCATATAGTTCTGGTCGTAACCAGCAGAGGAAGACCCGATCCATGATCCAGACCCTTGCCGCATTCGCCCTGTTTGTGTC
GCTGCACGTGGTCCTTTGTC

Downstream 100 bases:

>100_bases
AAGCGGGGATTGCTGGCAAAATCGCCGCGCGCCCAGGCCTGTTTGGCCTCTTCGATCTTCTCCTTGGAGGAGGCGACGAA
GTTCCACCAGATGTGGCGCG

Product: ABC transporter related

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 545; Mature: 544

Protein sequence:

>545_residues
MSSPSACVLLDGLRWSAADARPLFSDLTLHLQSGRMGLVGRNGSGKTTLLRLIAGDLPPEGGRVQVSGRLGWMRQEVASA
AHLTVADLFGVAPALARLRRIERGVATDTDLAEADWTLPARIEAALQRCGVSVAPEEPLAPLSGGQRTRVALAAQIFQAP
DILLLDEPTNTLDAEGRAMVRRLLRDWRGLALVVSHDRAVLEEMDAIVELRAGGAQRYAGPYSQYRAERDMELAAAYQDL
HEAEKTRKETMRRAQDATERKARRDSQGRAARASGSQPKVLLDKAKERAEASKGAGVRLREARRTEAEAALADARERIEV
LEPIQMEIPATGLRNQTRLVALQHITAGYGPHTVLRDFSLEITGPERIAVMGPNGCGKTTLLSLILGHLEPHAGHITRPA
EAALLDQHLSLLKSDETLLENYLRLNPGVGAQDAHAALARFRFRASEALWQAAALSSGQRLRAGLACTLARPTPPPLLVL
DEPTNHLDFEGLEALEAALLGYDGALIVVSHDSAFLDRIALTRRLVLPSQRSGSGINSLSSPGGS

Sequences:

>Translated_545_residues
MSSPSACVLLDGLRWSAADARPLFSDLTLHLQSGRMGLVGRNGSGKTTLLRLIAGDLPPEGGRVQVSGRLGWMRQEVASA
AHLTVADLFGVAPALARLRRIERGVATDTDLAEADWTLPARIEAALQRCGVSVAPEEPLAPLSGGQRTRVALAAQIFQAP
DILLLDEPTNTLDAEGRAMVRRLLRDWRGLALVVSHDRAVLEEMDAIVELRAGGAQRYAGPYSQYRAERDMELAAAYQDL
HEAEKTRKETMRRAQDATERKARRDSQGRAARASGSQPKVLLDKAKERAEASKGAGVRLREARRTEAEAALADARERIEV
LEPIQMEIPATGLRNQTRLVALQHITAGYGPHTVLRDFSLEITGPERIAVMGPNGCGKTTLLSLILGHLEPHAGHITRPA
EAALLDQHLSLLKSDETLLENYLRLNPGVGAQDAHAALARFRFRASEALWQAAALSSGQRLRAGLACTLARPTPPPLLVL
DEPTNHLDFEGLEALEAALLGYDGALIVVSHDSAFLDRIALTRRLVLPSQRSGSGINSLSSPGGS
>Mature_544_residues
SSPSACVLLDGLRWSAADARPLFSDLTLHLQSGRMGLVGRNGSGKTTLLRLIAGDLPPEGGRVQVSGRLGWMRQEVASAA
HLTVADLFGVAPALARLRRIERGVATDTDLAEADWTLPARIEAALQRCGVSVAPEEPLAPLSGGQRTRVALAAQIFQAPD
ILLLDEPTNTLDAEGRAMVRRLLRDWRGLALVVSHDRAVLEEMDAIVELRAGGAQRYAGPYSQYRAERDMELAAAYQDLH
EAEKTRKETMRRAQDATERKARRDSQGRAARASGSQPKVLLDKAKERAEASKGAGVRLREARRTEAEAALADARERIEVL
EPIQMEIPATGLRNQTRLVALQHITAGYGPHTVLRDFSLEITGPERIAVMGPNGCGKTTLLSLILGHLEPHAGHITRPAE
AALLDQHLSLLKSDETLLENYLRLNPGVGAQDAHAALARFRFRASEALWQAAALSSGQRLRAGLACTLARPTPPPLLVLD
EPTNHLDFEGLEALEAALLGYDGALIVVSHDSAFLDRIALTRRLVLPSQRSGSGINSLSSPGGS

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=511, Percent_Identity=31.1154598825832, Blast_Score=159, Evalue=5e-39,
Organism=Homo sapiens, GI69354671, Length=543, Percent_Identity=28.3609576427256, Blast_Score=156, Evalue=5e-38,
Organism=Homo sapiens, GI10947135, Length=543, Percent_Identity=28.3609576427256, Blast_Score=155, Evalue=6e-38,
Organism=Homo sapiens, GI10947137, Length=529, Percent_Identity=27.4102079395085, Blast_Score=128, Evalue=2e-29,
Organism=Homo sapiens, GI27881506, Length=529, Percent_Identity=27.0321361058601, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI27477115, Length=240, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=2e-12,
Organism=Homo sapiens, GI6005701, Length=231, Percent_Identity=27.7056277056277, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI42741659, Length=232, Percent_Identity=27.1551724137931, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI171184400, Length=212, Percent_Identity=28.7735849056604, Blast_Score=69, Evalue=2e-11,
Organism=Homo sapiens, GI9961252, Length=230, Percent_Identity=26.0869565217391, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI4505771, Length=230, Percent_Identity=26.0869565217391, Blast_Score=67, Evalue=5e-11,
Organism=Escherichia coli, GI1789751, Length=520, Percent_Identity=30.3846153846154, Blast_Score=189, Evalue=3e-49,
Organism=Escherichia coli, GI2367384, Length=531, Percent_Identity=31.0734463276836, Blast_Score=184, Evalue=2e-47,
Organism=Escherichia coli, GI1787182, Length=538, Percent_Identity=30.6691449814126, Blast_Score=183, Evalue=2e-47,
Organism=Escherichia coli, GI1787041, Length=554, Percent_Identity=27.7978339350181, Blast_Score=180, Evalue=2e-46,
Organism=Escherichia coli, GI1788761, Length=221, Percent_Identity=33.0316742081448, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1786563, Length=186, Percent_Identity=36.0215053763441, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788165, Length=184, Percent_Identity=34.7826086956522, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87081709, Length=224, Percent_Identity=26.3392857142857, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1787370, Length=287, Percent_Identity=27.1777003484321, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1790544, Length=245, Percent_Identity=32.2448979591837, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1786253, Length=213, Percent_Identity=34.2723004694836, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1789873, Length=194, Percent_Identity=28.3505154639175, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786345, Length=215, Percent_Identity=29.3023255813954, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790739, Length=213, Percent_Identity=29.1079812206573, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787712, Length=206, Percent_Identity=29.6116504854369, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1790467, Length=234, Percent_Identity=30.3418803418803, Blast_Score=63, Evalue=5e-11,
Organism=Escherichia coli, GI1786803, Length=176, Percent_Identity=31.25, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI1787105, Length=208, Percent_Identity=27.4038461538462, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=526, Percent_Identity=30.7984790874525, Blast_Score=160, Evalue=2e-39,
Organism=Caenorhabditis elegans, GI17559834, Length=533, Percent_Identity=27.2045028142589, Blast_Score=158, Evalue=7e-39,
Organism=Caenorhabditis elegans, GI17555318, Length=525, Percent_Identity=28.5714285714286, Blast_Score=157, Evalue=2e-38,
Organism=Caenorhabditis elegans, GI17569081, Length=212, Percent_Identity=27.3584905660377, Blast_Score=83, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI115533592, Length=235, Percent_Identity=29.3617021276596, Blast_Score=73, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17558664, Length=266, Percent_Identity=26.3157894736842, Blast_Score=70, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17565586, Length=232, Percent_Identity=27.5862068965517, Blast_Score=66, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6321121, Length=568, Percent_Identity=27.9929577464789, Blast_Score=164, Evalue=3e-41,
Organism=Saccharomyces cerevisiae, GI6320874, Length=530, Percent_Identity=27.5471698113208, Blast_Score=134, Evalue=4e-32,
Organism=Saccharomyces cerevisiae, GI6323278, Length=175, Percent_Identity=32, Blast_Score=70, Evalue=7e-13,
Organism=Saccharomyces cerevisiae, GI6320296, Length=182, Percent_Identity=29.1208791208791, Blast_Score=70, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6324314, Length=179, Percent_Identity=30.1675977653631, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24666836, Length=531, Percent_Identity=30.1318267419962, Blast_Score=169, Evalue=4e-42,
Organism=Drosophila melanogaster, GI24641342, Length=555, Percent_Identity=29.1891891891892, Blast_Score=166, Evalue=3e-41,
Organism=Drosophila melanogaster, GI24642252, Length=521, Percent_Identity=26.8714011516315, Blast_Score=150, Evalue=3e-36,
Organism=Drosophila melanogaster, GI18859989, Length=521, Percent_Identity=26.8714011516315, Blast_Score=150, Evalue=3e-36,
Organism=Drosophila melanogaster, GI28574259, Length=208, Percent_Identity=31.7307692307692, Blast_Score=89, Evalue=9e-18,
Organism=Drosophila melanogaster, GI45552437, Length=299, Percent_Identity=26.7558528428094, Blast_Score=84, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24585557, Length=299, Percent_Identity=26.7558528428094, Blast_Score=84, Evalue=3e-16,
Organism=Drosophila melanogaster, GI62484234, Length=261, Percent_Identity=26.0536398467433, Blast_Score=80, Evalue=4e-15,
Organism=Drosophila melanogaster, GI161077321, Length=255, Percent_Identity=28.6274509803922, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24648279, Length=208, Percent_Identity=27.8846153846154, Blast_Score=75, Evalue=9e-14,
Organism=Drosophila melanogaster, GI161078426, Length=208, Percent_Identity=27.8846153846154, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24585091, Length=220, Percent_Identity=27.7272727272727, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281363262, Length=218, Percent_Identity=31.1926605504587, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24653245, Length=218, Percent_Identity=31.1926605504587, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI45550390, Length=214, Percent_Identity=28.9719626168224, Blast_Score=70, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24649703, Length=229, Percent_Identity=27.5109170305677, Blast_Score=67, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 58794; Mature: 58663

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: PS00024 HEMOPEXIN ; PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPSACVLLDGLRWSAADARPLFSDLTLHLQSGRMGLVGRNGSGKTTLLRLIAGDLPPE
CCCCCCEEEEECCCCCCCCCCHHHHHHHEEEECCCEEEEECCCCCHHHHHHHHHCCCCCC
GGRVQVSGRLGWMRQEVASAAHLTVADLFGVAPALARLRRIERGVATDTDLAEADWTLPA
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
RIEAALQRCGVSVAPEEPLAPLSGGQRTRVALAAQIFQAPDILLLDEPTNTLDAEGRAMV
HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHH
RRLLRDWRGLALVVSHDRAVLEEMDAIVELRAGGAQRYAGPYSQYRAERDMELAAAYQDL
HHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHCCHHHHHHHHHH
HEAEKTRKETMRRAQDATERKARRDSQGRAARASGSQPKVLLDKAKERAEASKGAGVRLR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCEEH
EARRTEAEAALADARERIEVLEPIQMEIPATGLRNQTRLVALQHITAGYGPHTVLRDFSL
HHHHHHHHHHHHHHHHHHHHHCCHHEECCCCCCCCCHHEEEEHHHHCCCCHHHHHHHCEE
EITGPERIAVMGPNGCGKTTLLSLILGHLEPHAGHITRPAEAALLDQHLSLLKSDETLLE
EECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHH
NYLRLNPGVGAQDAHAALARFRFRASEALWQAAALSSGQRLRAGLACTLARPTPPPLLVL
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCEEEEECCCCCCCEEEE
DEPTNHLDFEGLEALEAALLGYDGALIVVSHDSAFLDRIALTRRLVLPSQRSGSGINSLS
CCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
SPGGS
CCCCC
>Mature Secondary Structure 
SSPSACVLLDGLRWSAADARPLFSDLTLHLQSGRMGLVGRNGSGKTTLLRLIAGDLPPE
CCCCCEEEEECCCCCCCCCCHHHHHHHEEEECCCEEEEECCCCCHHHHHHHHHCCCCCC
GGRVQVSGRLGWMRQEVASAAHLTVADLFGVAPALARLRRIERGVATDTDLAEADWTLPA
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
RIEAALQRCGVSVAPEEPLAPLSGGQRTRVALAAQIFQAPDILLLDEPTNTLDAEGRAMV
HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHH
RRLLRDWRGLALVVSHDRAVLEEMDAIVELRAGGAQRYAGPYSQYRAERDMELAAAYQDL
HHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHCCHHHHHHHHHH
HEAEKTRKETMRRAQDATERKARRDSQGRAARASGSQPKVLLDKAKERAEASKGAGVRLR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCEEH
EARRTEAEAALADARERIEVLEPIQMEIPATGLRNQTRLVALQHITAGYGPHTVLRDFSL
HHHHHHHHHHHHHHHHHHHHHCCHHEECCCCCCCCCHHEEEEHHHHCCCCHHHHHHHCEE
EITGPERIAVMGPNGCGKTTLLSLILGHLEPHAGHITRPAEAALLDQHLSLLKSDETLLE
EECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHH
NYLRLNPGVGAQDAHAALARFRFRASEALWQAAALSSGQRLRAGLACTLARPTPPPLLVL
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCEEEEECCCCCCCEEEE
DEPTNHLDFEGLEALEAALLGYDGALIVVSHDSAFLDRIALTRRLVLPSQRSGSGINSLS
CCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
SPGGS
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]