| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081579
Identifier: 99081579
GI number: 99081579
Start: 1833164
End: 1833802
Strand: Reverse
Name: 99081579
Synonym: TM1040_1738
Alternate gene names: NA
Gene position: 1833802-1833164 (Counterclockwise)
Preceding gene: 99081580
Following gene: 99081578
Centisome position: 57.29
GC content: 60.09
Gene sequence:
>639_bases ATGATCAGGACATTTGCCACCCTTGCCGTTCTTGCTGCGCCGCTTCCTGTGCTGGCGCACCCGCATATTTTTGTCGATAG CGGTCTCAAACTCGAGGTGGACGCCGAGGGCTTTCTCAAAGCTGCCGAAGTGACCTGGGTCTATGATGACTTTTACACGC TTCTTGTCTTCGAAGACATGATGCTCGACAGCGATTTCGACGGCGCGCTGACGCCCGCTGAACTCGAGCGGTTGAAGGGA TTTGATCTCAACTGGGTCGAGGGCTACGAGGGCGATCTCTATCTCACCCAGCGCGACACGCAACTCAGTCTTGGCGCGCC AGAGCATCTGAGCACCGAGGTCCGCGATGGCGTGATCATCACCCGGCATCGGCGCCCGGTGACAGAACCTGTCCCGGTTT TGGCCAATGGGGTGACGGCGCGGATGTATGATCCGACCTATTACACCGCATATGATCTGAACCGAGGGGTCGAGATCACC GGGCCCTGCGCCGCGCAGGTGACGCCGCCCAATCTGGATCAGGCCTACACATTGGTCGAAGAGCTGCTCTATTCGATGCC CACCGAGCAGGCCGAGGACGCGTTCCCGGAGGTTGGCTCCGCGTTTGCATCCACCGTCGCCGTGGCGTGTGAGGGCTGA
Upstream 100 bases:
>100_bases CTGAGGCGCTGCACGTGCCAGTGGCGAATTCCGGCACACCCGGCGGGGGCCGGGGTTTCCGCCCTTGAAGCACTGCAGAC AGTTCTCTAGCGTCGCGGTC
Downstream 100 bases:
>100_bases GAGGGTGCGGCACCTCCCAGGGATTGTGTTGGCGATCACGCTGGTTGCCCTTGCTGCGCTTGCGATCTGGCTCTGGGGGC TTGGCGGCGCGGATCATATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 212; Mature: 212
Protein sequence:
>212_residues MIRTFATLAVLAAPLPVLAHPHIFVDSGLKLEVDAEGFLKAAEVTWVYDDFYTLLVFEDMMLDSDFDGALTPAELERLKG FDLNWVEGYEGDLYLTQRDTQLSLGAPEHLSTEVRDGVIITRHRRPVTEPVPVLANGVTARMYDPTYYTAYDLNRGVEIT GPCAAQVTPPNLDQAYTLVEELLYSMPTEQAEDAFPEVGSAFASTVAVACEG
Sequences:
>Translated_212_residues MIRTFATLAVLAAPLPVLAHPHIFVDSGLKLEVDAEGFLKAAEVTWVYDDFYTLLVFEDMMLDSDFDGALTPAELERLKG FDLNWVEGYEGDLYLTQRDTQLSLGAPEHLSTEVRDGVIITRHRRPVTEPVPVLANGVTARMYDPTYYTAYDLNRGVEIT GPCAAQVTPPNLDQAYTLVEELLYSMPTEQAEDAFPEVGSAFASTVAVACEG >Mature_212_residues MIRTFATLAVLAAPLPVLAHPHIFVDSGLKLEVDAEGFLKAAEVTWVYDDFYTLLVFEDMMLDSDFDGALTPAELERLKG FDLNWVEGYEGDLYLTQRDTQLSLGAPEHLSTEVRDGVIITRHRRPVTEPVPVLANGVTARMYDPTYYTAYDLNRGVEIT GPCAAQVTPPNLDQAYTLVEELLYSMPTEQAEDAFPEVGSAFASTVAVACEG
Specific function: Unknown
COG id: COG3683
COG function: function code R; ABC-type uncharacterized transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23354; Mature: 23354
Theoretical pI: Translated: 3.97; Mature: 3.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRTFATLAVLAAPLPVLAHPHIFVDSGLKLEVDAEGFLKAAEVTWVYDDFYTLLVFEDM CCCHHHHHHHHHCCCCHHCCCEEEECCCCEEEECCCCCEEEEEEEEEEHHHHEEEHHHHH MLDSDFDGALTPAELERLKGFDLNWVEGYEGDLYLTQRDTQLSLGAPEHLSTEVRDGVII HHCCCCCCCCCHHHHHHHCCCCCCEECCCCCCEEEEECCCEEECCCCHHHHHHHHCCEEE TRHRRPVTEPVPVLANGVTARMYDPTYYTAYDLNRGVEITGPCAAQVTPPNLDQAYTLVE EECCCCCCCCCCHHCCCEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCHHHHHHHH ELLYSMPTEQAEDAFPEVGSAFASTVAVACEG HHHHHCCCCHHHHHHHHHHHHHHHHEEEEECC >Mature Secondary Structure MIRTFATLAVLAAPLPVLAHPHIFVDSGLKLEVDAEGFLKAAEVTWVYDDFYTLLVFEDM CCCHHHHHHHHHCCCCHHCCCEEEECCCCEEEECCCCCEEEEEEEEEEHHHHEEEHHHHH MLDSDFDGALTPAELERLKGFDLNWVEGYEGDLYLTQRDTQLSLGAPEHLSTEVRDGVII HHCCCCCCCCCHHHHHHHCCCCCCEECCCCCCEEEEECCCEEECCCCHHHHHHHHCCEEE TRHRRPVTEPVPVLANGVTARMYDPTYYTAYDLNRGVEITGPCAAQVTPPNLDQAYTLVE EECCCCCCCCCCHHCCCEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCHHHHHHHH ELLYSMPTEQAEDAFPEVGSAFASTVAVACEG HHHHHCCCCHHHHHHHHHHHHHHHHEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA