| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081518
Identifier: 99081518
GI number: 99081518
Start: 1775642
End: 1776403
Strand: Reverse
Name: 99081518
Synonym: TM1040_1677
Alternate gene names: NA
Gene position: 1776403-1775642 (Counterclockwise)
Preceding gene: 99081519
Following gene: 99081517
Centisome position: 55.5
GC content: 61.29
Gene sequence:
>762_bases ATGACTTTCATGCCTATTGGACAGACCGGACAGACGCTGGCGGAAGAAAGTCTCGACGCGGTTGGCGGCAAACGTGGCGC AACCGCTGTCGCGACGTCGCGCCAAAATTCATCCGAAATCGCCGAATGGCTGGCCAAGCATACCCCGGCGGACATGGACA AGGCGGCGGTCTCGCGGGCGCGGTCGCACGGCGTCAATTTGGAGGTCAAATTTGAGGGCCGTTATCCGACTGGCCCCAAT GGCGAGTATCTCCCCAGCTACGAGGTTGCAGTCGGCTGCCGCATTCACGGGACCACGGCTCAGCGCGAGGCTGCGATTGA AGATCTGAAGAAGTTTCAGACGCCTGCGCCTATTCCGCAGATTGAGCGCTGGCTGGCCGAGCTTTCGGTTCTCACAGCGG GGCGCGGCACTGACGGTATCGCGGCAGAACTTCAGCTCACCGCATATTCCTCTCGTTTGGCGCAATACCCCGCTGATGTG GTCCGTCACGCGCTTTTGCAGCATTCGTGGAAGTGGTTCCCATCGTGGGCCGAATTGGAGCGACTGTGTGAGGCTAAGGC CAGTCCTCGCCGCCACATGATCGCCGCCCTGTCTCAACCCGCGCCAGACCCGGAACCGAAGCGCCGTCCGCCAACAAACG AGGAACGCGCCCGCATTCAGGCCATGGTTGACGAGATGTTCCCGCGCCAGTCGAGGAAAGATCGCGAGGCTGCTGTAGAT ATCGCCCTGCGAGGCGATTGCATGATGGGTGACCCGTCATGA
Upstream 100 bases:
>100_bases GTCAAGGCACGGCTGCCCGAGGACTGGTGCCCCAGTGACGAAGACCGAGAATACGCCCTTTCATTGAATTTGACCGAGGC CGAGATTGAGGAGATCGCAG
Downstream 100 bases:
>100_bases GCGCCCCGGAGACATGGCCCGAGATCCTTCGCCGCCACGAACTGGAGAAGATGCGCGCTATCCACGCTCATATCGACAGC AGCCTTCCCAAGGTGGCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 253; Mature: 252
Protein sequence:
>253_residues MTFMPIGQTGQTLAEESLDAVGGKRGATAVATSRQNSSEIAEWLAKHTPADMDKAAVSRARSHGVNLEVKFEGRYPTGPN GEYLPSYEVAVGCRIHGTTAQREAAIEDLKKFQTPAPIPQIERWLAELSVLTAGRGTDGIAAELQLTAYSSRLAQYPADV VRHALLQHSWKWFPSWAELERLCEAKASPRRHMIAALSQPAPDPEPKRRPPTNEERARIQAMVDEMFPRQSRKDREAAVD IALRGDCMMGDPS
Sequences:
>Translated_253_residues MTFMPIGQTGQTLAEESLDAVGGKRGATAVATSRQNSSEIAEWLAKHTPADMDKAAVSRARSHGVNLEVKFEGRYPTGPN GEYLPSYEVAVGCRIHGTTAQREAAIEDLKKFQTPAPIPQIERWLAELSVLTAGRGTDGIAAELQLTAYSSRLAQYPADV VRHALLQHSWKWFPSWAELERLCEAKASPRRHMIAALSQPAPDPEPKRRPPTNEERARIQAMVDEMFPRQSRKDREAAVD IALRGDCMMGDPS >Mature_252_residues TFMPIGQTGQTLAEESLDAVGGKRGATAVATSRQNSSEIAEWLAKHTPADMDKAAVSRARSHGVNLEVKFEGRYPTGPNG EYLPSYEVAVGCRIHGTTAQREAAIEDLKKFQTPAPIPQIERWLAELSVLTAGRGTDGIAAELQLTAYSSRLAQYPADVV RHALLQHSWKWFPSWAELERLCEAKASPRRHMIAALSQPAPDPEPKRRPPTNEERARIQAMVDEMFPRQSRKDREAAVDI ALRGDCMMGDPS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27900; Mature: 27769
Theoretical pI: Translated: 7.13; Mature: 7.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFMPIGQTGQTLAEESLDAVGGKRGATAVATSRQNSSEIAEWLAKHTPADMDKAAVSRA CCCCCCCCCHHHHHHHHHHHHCCCCCCHHEEECCCCHHHHHHHHHHCCCCCHHHHHHHHH RSHGVNLEVKFEGRYPTGPNGEYLPSYEVAVGCRIHGTTAQREAAIEDLKKFQTPAPIPQ HHCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCHH IERWLAELSVLTAGRGTDGIAAELQLTAYSSRLAQYPADVVRHALLQHSWKWFPSWAELE HHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHH RLCEAKASPRRHMIAALSQPAPDPEPKRRPPTNEERARIQAMVDEMFPRQSRKDREAAVD HHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHEE IALRGDCMMGDPS EEEECCEECCCCC >Mature Secondary Structure TFMPIGQTGQTLAEESLDAVGGKRGATAVATSRQNSSEIAEWLAKHTPADMDKAAVSRA CCCCCCCCHHHHHHHHHHHHCCCCCCHHEEECCCCHHHHHHHHHHCCCCCHHHHHHHHH RSHGVNLEVKFEGRYPTGPNGEYLPSYEVAVGCRIHGTTAQREAAIEDLKKFQTPAPIPQ HHCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCHH IERWLAELSVLTAGRGTDGIAAELQLTAYSSRLAQYPADVVRHALLQHSWKWFPSWAELE HHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHH RLCEAKASPRRHMIAALSQPAPDPEPKRRPPTNEERARIQAMVDEMFPRQSRKDREAAVD HHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHEE IALRGDCMMGDPS EEEECCEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA