Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081513

Identifier: 99081513

GI number: 99081513

Start: 1772661

End: 1773068

Strand: Reverse

Name: 99081513

Synonym: TM1040_1672

Alternate gene names: NA

Gene position: 1773068-1772661 (Counterclockwise)

Preceding gene: 99081515

Following gene: 99081512

Centisome position: 55.39

GC content: 62.75

Gene sequence:

>408_bases
ATGACCCGCATCCAGCGCCCCCGATATGACGATGTTTTCGCCGGTCACGACGAGGGCGGGCCGATGGCTGAGCAGGCCAA
AGTGCTCTGGGAGGAATACAAGGCCGACCTTGAGGCTCGTGGGCTTTGGAACCGGGCGCGTGCGCGGACACTGGACCGGC
TGGTGCGCATGACTGCCGAATATCTGCATTATCAGCCGCTGGCTGTGGCGCAGGGGCCGGTGCGGGAGAGTGGCGACGGC
GGGCAGTACGTGAACATGCTCTGGTCGCAAGTGAAGAACATGGCCGAGCAGATCGGCAAGCTGGAAAAGGCGCTCACGCT
GACGCCTGAGAGCGTAGGCGCAAAAGCAGAGGCGCCGAAGAAGACACCGGAAAAGACGGCAGCAGATGAGTTCCTCGGAG
CGCATTGA

Upstream 100 bases:

>100_bases
GAGGGTAGGGGGGGGGAGGTCCAAAGTTCAGGCCTCCACACTGGAAACCTATCGCCGGTCCTCCGTGCGCAATATCTGCT
CCCGAAAGTAGGGGTGTCCC

Downstream 100 bases:

>100_bases
CCAGACCACGCGATACGCGCGGGATGTGGTTTCGGGAAAGATCGTAGCGGGCGCATTCGTGCGGGCGCAATGCCAGCGGC
ACCTAGATGATCTGAAGCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MTRIQRPRYDDVFAGHDEGGPMAEQAKVLWEEYKADLEARGLWNRARARTLDRLVRMTAEYLHYQPLAVAQGPVRESGDG
GQYVNMLWSQVKNMAEQIGKLEKALTLTPESVGAKAEAPKKTPEKTAADEFLGAH

Sequences:

>Translated_135_residues
MTRIQRPRYDDVFAGHDEGGPMAEQAKVLWEEYKADLEARGLWNRARARTLDRLVRMTAEYLHYQPLAVAQGPVRESGDG
GQYVNMLWSQVKNMAEQIGKLEKALTLTPESVGAKAEAPKKTPEKTAADEFLGAH
>Mature_134_residues
TRIQRPRYDDVFAGHDEGGPMAEQAKVLWEEYKADLEARGLWNRARARTLDRLVRMTAEYLHYQPLAVAQGPVRESGDGG
QYVNMLWSQVKNMAEQIGKLEKALTLTPESVGAKAEAPKKTPEKTAADEFLGAH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15126; Mature: 14995

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRIQRPRYDDVFAGHDEGGPMAEQAKVLWEEYKADLEARGLWNRARARTLDRLVRMTAE
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLHYQPLAVAQGPVRESGDGGQYVNMLWSQVKNMAEQIGKLEKALTLTPESVGAKAEAPK
HHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCC
KTPEKTAADEFLGAH
CCCCHHHHHHHHCCC
>Mature Secondary Structure 
TRIQRPRYDDVFAGHDEGGPMAEQAKVLWEEYKADLEARGLWNRARARTLDRLVRMTAE
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLHYQPLAVAQGPVRESGDGGQYVNMLWSQVKNMAEQIGKLEKALTLTPESVGAKAEAPK
HHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCC
KTPEKTAADEFLGAH
CCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA