| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081496
Identifier: 99081496
GI number: 99081496
Start: 1755461
End: 1756456
Strand: Reverse
Name: 99081496
Synonym: TM1040_1655
Alternate gene names: NA
Gene position: 1756456-1755461 (Counterclockwise)
Preceding gene: 99081497
Following gene: 99081495
Centisome position: 54.87
GC content: 50.6
Gene sequence:
>996_bases GTGACGGGTACCGTCAAAAACTTTACCCTGAAGCTGACAGGTGGTTCCGAGAACGTCGGTTTCGCTCTGACATCAGCGAC GTACGACGGTGTTTCTTTTTCGGTAGGGGCACAGGGAACTGAACCAAAATCAATAACCTTCAGGCCAGACGGCACAAAGA TGTTCGTCAGTGACGGCAGCACCCCGGACTCCATATACCAATATAGTCTGTCAACAGCTTGGGATTTATCCACCGCCAGT TACGACAGTGCCTCATTCAATGTGACTTCGCAGGTGGGAGTAGTTGAAGGCGTAGAGTTTAGTTCAGACGGGACGAAAAT GTTCGTCCTCGATTTCAACAGTGACAGGGTCTACCAATACACTCTGTCAACAGCGTGGGACTTATCCACGGGAAGTTACG ATAGTGTTTCGTACCTTGTGCCGTCACCGGTGACACAACCTCAAGGCTTGGCGTTTAACCCCGATGGTACAAAGATGTAC GTGCAGGGGTACGGTCCGAATGAGGGGATTTCTCAGTTCACGCTCTCTACTGCGTGGGACTTGTCTACGGCTAGCTACGA CAGCGTCAATTTTGACTTCACTGCGCCGTCTGTAAGTTTCGCTGTGAACATGTCCATCTCAAGCGACGGAACGAAGATAT TTTTACAGAACTCCAGTTCTGTAATTCAGTACAACTTGTCGACAGCATGGGACTTGTCTACGGCGACCTACTCTGGGGTT TCGTTTTCCGTGTCCGCTCAAGACACTGCGATGAAACACGCAGTTTTCAAACCAGATGGTACAAAAATGTTCGTTGCGGG GGACGCCAACAACTCGATGTTTCAGTACTCCGCTGATGTCGACGTTGATTTCACTTTGACCTACCCGACGATACAGTGGC CGGGCGGCGTCACCCCTACAGTTGCGTCAGGTGGCGACTCGGATCTGATAGACTTCACCACTTATGATGGAGGTGTCGTC TTTTACGGCACGAAGCGAGGAGACACTTACTCATGA
Upstream 100 bases:
>100_bases GACTTTAACCGGGACGTCTCCCGCTTTGGATTTGTCAGCTGCTGATTTCTTCGACTTGACCCTCACTGGCGACACGACGT TGTCTTTTGTTAATCCGCCT
Downstream 100 bases:
>100_bases CTTACGCTTTGGTTCGAGACGGCGTCTTGATTCAATACCCTTATTCCCTCGAAGACCTTCGTCGCGACAACCCTCGCTTG AGCCTGCCGCTCACCCTTCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 331; Mature: 330
Protein sequence:
>331_residues MTGTVKNFTLKLTGGSENVGFALTSATYDGVSFSVGAQGTEPKSITFRPDGTKMFVSDGSTPDSIYQYSLSTAWDLSTAS YDSASFNVTSQVGVVEGVEFSSDGTKMFVLDFNSDRVYQYTLSTAWDLSTGSYDSVSYLVPSPVTQPQGLAFNPDGTKMY VQGYGPNEGISQFTLSTAWDLSTASYDSVNFDFTAPSVSFAVNMSISSDGTKIFLQNSSSVIQYNLSTAWDLSTATYSGV SFSVSAQDTAMKHAVFKPDGTKMFVAGDANNSMFQYSADVDVDFTLTYPTIQWPGGVTPTVASGGDSDLIDFTTYDGGVV FYGTKRGDTYS
Sequences:
>Translated_331_residues MTGTVKNFTLKLTGGSENVGFALTSATYDGVSFSVGAQGTEPKSITFRPDGTKMFVSDGSTPDSIYQYSLSTAWDLSTAS YDSASFNVTSQVGVVEGVEFSSDGTKMFVLDFNSDRVYQYTLSTAWDLSTGSYDSVSYLVPSPVTQPQGLAFNPDGTKMY VQGYGPNEGISQFTLSTAWDLSTASYDSVNFDFTAPSVSFAVNMSISSDGTKIFLQNSSSVIQYNLSTAWDLSTATYSGV SFSVSAQDTAMKHAVFKPDGTKMFVAGDANNSMFQYSADVDVDFTLTYPTIQWPGGVTPTVASGGDSDLIDFTTYDGGVV FYGTKRGDTYS >Mature_330_residues TGTVKNFTLKLTGGSENVGFALTSATYDGVSFSVGAQGTEPKSITFRPDGTKMFVSDGSTPDSIYQYSLSTAWDLSTASY DSASFNVTSQVGVVEGVEFSSDGTKMFVLDFNSDRVYQYTLSTAWDLSTGSYDSVSYLVPSPVTQPQGLAFNPDGTKMYV QGYGPNEGISQFTLSTAWDLSTASYDSVNFDFTAPSVSFAVNMSISSDGTKIFLQNSSSVIQYNLSTAWDLSTATYSGVS FSVSAQDTAMKHAVFKPDGTKMFVAGDANNSMFQYSADVDVDFTLTYPTIQWPGGVTPTVASGGDSDLIDFTTYDGGVVF YGTKRGDTYS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35384; Mature: 35253
Theoretical pI: Translated: 3.87; Mature: 3.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGTVKNFTLKLTGGSENVGFALTSATYDGVSFSVGAQGTEPKSITFRPDGTKMFVSDGS CCCCEEEEEEEEECCCCCCCEEEEEEEECCEEEEECCCCCCCCEEEECCCCCEEEEECCC TPDSIYQYSLSTAWDLSTASYDSASFNVTSQVGVVEGVEFSSDGTKMFVLDFNSDRVYQY CCCCEEEEECCCEEECCCCCCCCCEEEEEECCCEEECEEECCCCCEEEEEECCCCEEEEE TLSTAWDLSTGSYDSVSYLVPSPVTQPQGLAFNPDGTKMYVQGYGPNEGISQFTLSTAWD EECEEEECCCCCCCCEEEECCCCCCCCCCEEECCCCCEEEEEECCCCCCCCEEEEEEEEE LSTASYDSVNFDFTAPSVSFAVNMSISSDGTKIFLQNSSSVIQYNLSTAWDLSTATYSGV CCCCCCCCEEEEEECCCEEEEEEEEECCCCCEEEEECCCCEEEEECCCEEECCCEEECCE SFSVSAQDTAMKHAVFKPDGTKMFVAGDANNSMFQYSADVDVDFTLTYPTIQWPGGVTPT EEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCEEECCCCCCCE VASGGDSDLIDFTTYDGGVVFYGTKRGDTYS EECCCCCCEEEEEECCCCEEEEECCCCCCCC >Mature Secondary Structure TGTVKNFTLKLTGGSENVGFALTSATYDGVSFSVGAQGTEPKSITFRPDGTKMFVSDGS CCCEEEEEEEEECCCCCCCEEEEEEEECCEEEEECCCCCCCCEEEECCCCCEEEEECCC TPDSIYQYSLSTAWDLSTASYDSASFNVTSQVGVVEGVEFSSDGTKMFVLDFNSDRVYQY CCCCEEEEECCCEEECCCCCCCCCEEEEEECCCEEECEEECCCCCEEEEEECCCCEEEEE TLSTAWDLSTGSYDSVSYLVPSPVTQPQGLAFNPDGTKMYVQGYGPNEGISQFTLSTAWD EECEEEECCCCCCCCEEEECCCCCCCCCCEEECCCCCEEEEEECCCCCCCCEEEEEEEEE LSTASYDSVNFDFTAPSVSFAVNMSISSDGTKIFLQNSSSVIQYNLSTAWDLSTATYSGV CCCCCCCCEEEEEECCCEEEEEEEEECCCCCEEEEECCCCEEEEECCCEEECCCEEECCE SFSVSAQDTAMKHAVFKPDGTKMFVAGDANNSMFQYSADVDVDFTLTYPTIQWPGGVTPT EEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCEEECCCCCCCE VASGGDSDLIDFTTYDGGVVFYGTKRGDTYS EECCCCCCEEEEEECCCCEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA